| Motif_455 | AG binding site motif | Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro | | 84.77% |
| Motif_327 | AGAMOUSATCONSENSUS | Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338 | | 81.44% |
| Motif_6 | AGL1 binding site motif | Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures | | 75.72% |
| Motif_105 | AGL3 binding site motif | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 73.56% |
| Matrix_358 | AGL15 | Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study | | 70.84% |
| Matrix_98 | AG | Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS | | 64.63% |
| Matrix_445 | AG | Not Available | | 64.63% |
| Matrix_43 | AG | Not Available | | 64.63% |
| Matrix_386 | AGL1 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 63.97% |
| Matrix_121 | SHP1 | Not Available | | 63.97% |
| Motif_198 | CARGATCONSENSUS | CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO) | | 61.95% |
| Matrix_18 | AP3 | Not Available | | 59.72% |
| Matrix_464 | AGL15; AGL71 | Not Available | | 58.92% |
| Motif_180 | AGL2 binding site motif | Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer | | 58.73% |
| Matrix_28 | SEP1 | Not Available | | 56.53% |
| Matrix_222 | AGL2 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 56.53% |
| Motif_47 | CARGNCAT | Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo | | 56.18% |
| Matrix_310 | AGL3 | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 55.45% |
| Matrix_2 | SEP4 | Not Available | | 55.45% |
| Matrix_417 | SEP4 | Not Available | | 55.45% |
| Matrix_428 | SEP4 | Not Available | | 54.51% |
| Motif_691 | HBOXCONSENSUSPVCHS | H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen | | 54.05% |
| Matrix_39 | AP1 | Not Available | | 53.88% |
| Matrix_83 | PRR5 | Not Available | | 52.78% |
| Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 52.59% |
| Matrix_458 | MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730 | Not Available | | 52.01% |
| Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | | 51.95% |
| Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 51.29% |
| Matrix_497 | AP3 | Not Available | | 51.14% |
| Matrix_48 | PI | Not Available | | 50.53% |
| Matrix_416 | ASL5 | Not Available | | 50.22% |
| Motif_9 | RBENTGA3 | rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs | | 50.14% |
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