| Matrix_279 | HRS1 | Not Available | | 77.58% |
| Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 68.08% |
| Matrix_392 | ARR2 | Not Available | | 67.12% |
| Matrix_248 | ZFP5 | Not Available | | 66.62% |
| Matrix_157 | LHY; RVE2 | Not Available | | 65.72% |
| Matrix_114 | EPR1; AT3G10113 | Not Available | | 64.45% |
| Matrix_210 | ARR1 | Not Available | | 63.65% |
| Matrix_4 | ARR14 | Not Available | | 63.30% |
| Matrix_423 | AT3G04030 | Not Available | | 62.36% |
| Matrix_425 | TIFY2A | Not Available | | 62.13% |
| Matrix_336 | AT5G08520 | Not Available | | 61.47% |
| Matrix_241 | HB-1; AT5G44180 | Not Available | | 59.98% |
| Matrix_100 | AT1G48610 | Not Available | | 59.23% |
| Matrix_78 | AT3G45610 | Not Available | | 57.55% |
| Matrix_76 | GATA10 | Not Available | | 57.23% |
| Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 56.97% |
| Motif_118 | CAATBOX2 | CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT | | 56.75% |
| Matrix_522 | GATA11; GATA13 | Not Available | | 56.67% |
| Matrix_350 | ARR14 | Not Available | | 56.17% |
| Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | | 55.62% |
| Matrix_361 | AT1G25550 | Not Available | | 55.58% |
| Matrix_177 | ADOF2 | Not Available | | 55.48% |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 55.16% |
| Matrix_84 | AtGRF6 | Not Available | | 55.04% |
| Motif_408 | EVENINGAT | Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock | | 55.01% |
| Matrix_447 | RVE1 | Not Available | | 55.00% |
| Motif_533 | Bellringer/replumless/pennywise BS3 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 54.49% |
| Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | | 54.36% |
| Matrix_324 | AT2G01060 | Not Available | | 54.24% |
| Matrix_411 | DOF5.6 | Not Available | | 53.96% |
| Matrix_97 | APRR2 | Not Available | | 53.92% |
| Motif_401 | ARR1AT | ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene | | 53.63% |
| Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | | 53.56% |
| Motif_517 | LEAFYATAG | Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis | | 53.53% |
| Matrix_366 | ARR14 | Not Available | | 53.49% |
| Motif_12 | CEREGLUBOX2PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 53.45% |
| Matrix_142 | ZFP8 | Not Available | | 53.33% |
| Matrix_16 | AT3G04450; PHL1 | Not Available | | 53.18% |
| Matrix_69 | AT2G03500 | Not Available | | 53.02% |
| Matrix_408 | GATA12 | Not Available | | 52.71% |
| Matrix_161 | MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570 | Not Available | | 52.51% |
| Motif_561 | GATA-2; GATA-4; GATA-3; GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 52.37% |
| Matrix_67 | GLK1 | Not Available | | 52.31% |
| Motif_419 | MYB4 binding site motif | Not Available | | 52.21% |
| Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 52.13% |
| Matrix_96 | TMO6 | Not Available | | 51.97% |
| Matrix_112 | TBP2; TFIID-1 | Not Available | | 51.90% |
| Matrix_502 | AT3G13040 | Not Available | | 51.82% |
| Motif_582 | ARR1; ARR2 | Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators | | 51.78% |
| Matrix_434 | ARR11 | Not Available | | 51.70% |
| Matrix_195 | GATA2; GATA4 | Not Available | | 51.57% |
| Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 51.41% |
| Matrix_8 | KAN1 | Not Available | | 51.29% |
| Matrix_35 | YAB5; YAB3 | Not Available | | 51.21% |
| Matrix_162 | AtPHR1 | Not Available | | 51.02% |
| Motif_312 | OCTAMERMOTIFTAH3H4 | Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes | | 51.01% |
| Matrix_487 | AT1G29160 | Not Available | | 50.93% |
| Matrix_152 | EIL1; AT5G65100 | Not Available | | 50.73% |
| Matrix_239 | AT5G04390 | Not Available | | 50.61% |
| Matrix_126 | RBE | Not Available | | 50.21% |
| Matrix_230 | ARR11 | Not Available | | 50.14% |
| Matrix_99 | DOF4.7 | Not Available | | 50.02% |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench