PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_473
Name: RRTF1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_234	RAP2.3	Not Available	92.46%
Matrix_252	RAP2.6	Not Available	91.59%
Matrix_378	ATERF1	Not Available	90.29%
Matrix_272	DEAR4	Not Available	86.86%
Matrix_146	ORA47	Not Available	85.25%
Matrix_343	AT2G33710	Not Available	84.84%
Matrix_190	ATERF1	Not Available	76.62%
Matrix_138	RRTF1	Not Available	75.68%
Matrix_287	ERF2	Not Available	74.20%
Matrix_86	CRF5; CRF6; CRF4	Not Available	74.02%
Matrix_147	ERF3; AT1G80580	Not Available	73.39%
Matrix_45	DRN	Not Available	72.99%
Matrix_426	CRF1; CRF2	Not Available	72.59%
Matrix_363	RAP2.3	Not Available	72.02%
Matrix_517	ERF12	Not Available	71.92%
Matrix_506	DRNL; ATERF-4	Not Available	71.39%
Matrix_119	RRTF1	Not Available	70.97%
Matrix_101	ERF5	Not Available	70.76%
Matrix_405	DREB2C	Not Available	70.70%
Matrix_295	ERF1	Not Available	70.67%
Matrix_493	AT1G22985; AT1G71130	Not Available	69.96%
Matrix_484	ATERF13	Not Available	69.37%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	69.21%
Matrix_91	CRF3	Not Available	69.11%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	68.98%
Matrix_261	ATERF-1	Not Available	68.92%
Matrix_288	RAP2.3	Not Available	68.38%
Matrix_321	HRD	Not Available	67.61%
Matrix_360	ORA59	Not Available	66.84%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	66.19%
Matrix_224	ERF1	Not Available	65.59%
Matrix_50	ATERF14; AT5G43410	Not Available	64.81%
Matrix_374	AT5G07580; AT5G61590	Not Available	64.31%
Matrix_409	DEAR3	Not Available	63.98%
Matrix_362	DEAR3	Not Available	63.96%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	63.91%
Matrix_277	RAP2.6	Not Available	63.71%
Matrix_5	AT5G51190; ERF104	Not Available	63.70%
Matrix_334	AT3G23230	Not Available	63.67%
Matrix_448	ATERF6	Not Available	63.36%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	62.43%
Matrix_196	TCP20; AT5G41030	Not Available	62.24%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	61.52%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	61.51%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	61.06%
Matrix_433	ATERF1	Not Available	60.68%
Matrix_57	WIN1; SHN3; SHN2	Not Available	60.38%
Matrix_355	ERF10; ERF11	Not Available	60.35%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	59.99%
Matrix_232	TCP23	Not Available	59.78%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	59.48%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	59.29%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	59.21%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	59.20%
Matrix_457	TGA2	Not Available	59.15%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	59.00%
Matrix_171	LBD3; LBD4	Not Available	58.83%
Matrix_373	E2FE	Not Available	58.48%
Matrix_144	AT5G08330; AT5G23280	Not Available	58.18%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	58.11%
Matrix_209	RAP2.6	Not Available	58.09%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	58.05%
Matrix_169	E2F1	Not Available	58.04%
Matrix_59	AT4G00238; AT4G00250	Not Available	57.89%
Matrix_344	ATERF15; AT4G18450	Not Available	57.82%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	57.47%
Matrix_92	AT1G33760	Not Available	57.08%
Motif_239	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	56.95%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	56.93%
Matrix_187	CDC5	Not Available	56.82%
Matrix_349	CDC5	Not Available	56.82%
Matrix_285	DDF1	Not Available	56.74%
Matrix_331	GBF1	Not Available	56.53%
Matrix_173	ZAP1	Not Available	56.35%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	56.27%
Matrix_482	AT2G25650; AT4G00270	Not Available	56.25%
Matrix_507	TCP3	Not Available	56.23%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	56.18%
Matrix_297	TCP15	Not Available	56.05%
Matrix_452	MYB46	Not Available	55.98%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	55.96%
Matrix_110	ATABI4; AT3G57600	Not Available	55.74%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	55.73%
Matrix_135	ABI3	Not Available	55.54%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	55.50%
Matrix_296	GBF2	Not Available	55.50%
Matrix_3	WRKY48	Not Available	55.49%
Matrix_61	ATCBF3	Not Available	55.37%
Matrix_300	bZIP68; bZIP16	Not Available	55.35%
Matrix_418	KNAT6; KNAT2	Not Available	55.33%
Matrix_475	AT5G64220	Not Available	55.27%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	55.07%
Matrix_243	RAP2.12; RAP2.2	Not Available	54.85%
Matrix_385	DEAR4	Not Available	54.77%
Matrix_244	DREB2C	Not Available	54.70%
Matrix_313	ATMYB65; MYB33	Not Available	54.69%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	54.62%
Matrix_109	GBF3	Not Available	54.52%
Matrix_489	RAV1	Not Available	54.50%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	54.50%
Matrix_40	TCP2	Not Available	54.47%
Matrix_450	SPL7	Not Available	54.47%
Matrix_102	WRKY21	Not Available	54.42%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	54.20%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	53.75%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	53.73%
Matrix_478	AT1G01250	Not Available	53.68%
Matrix_42	AT2G45680	Not Available	53.61%
Matrix_348	AT5G51910	Not Available	53.37%
Motif_636	AMMORESVDCRNIA1	Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation	53.36%
Matrix_69	AT2G03500	Not Available	53.15%
Matrix_420	ANAC58	Not Available	53.07%
Matrix_387	ORA47	Not Available	52.99%
Matrix_394	DREB_U	Not Available	52.92%
Matrix_75	WRKY29	Not Available	52.91%
Matrix_206	CUC1; ANAC100	Not Available	52.90%
Matrix_162	AtPHR1	Not Available	52.90%
Matrix_41	anac058	Not Available	52.86%
Matrix_156	POC1	Not Available	52.86%
Matrix_370	WRKY50; WRKY51	Not Available	52.62%
Matrix_376	WRKY45	Not Available	52.51%
Matrix_415	WRKY27	Not Available	52.41%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.40%
Matrix_186	FHY3	Not Available	52.36%
Motif_209	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.32%
Motif_318	CGCGBOXAT	CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs	52.26%
Matrix_151	ASIL1	Not Available	52.24%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	52.20%
Matrix_384	ATWRKY17	Not Available	52.17%
Matrix_399	TGA1	Not Available	52.10%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	52.05%
Matrix_406	ATERF-7	Not Available	51.95%
Matrix_16	AT3G04450; PHL1	Not Available	51.93%
Motif_372	E2FAT	E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression	51.90%
Matrix_197	NAP	Not Available	51.82%
Matrix_17	WRKY22	Not Available	51.75%
Matrix_389	ILR3	Not Available	51.71%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	51.69%
Matrix_456	bZIP60	Not Available	51.68%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	51.55%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	51.53%
Matrix_324	AT2G01060	Not Available	51.44%
Matrix_180	SPL1	Not Available	51.44%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	51.33%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.32%
Matrix_293	WRKY38	Not Available	51.17%
Motif_255	B2GMAUX28	B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif	51.12%
Matrix_361	AT1G25550	Not Available	51.02%
Motif_13	E2F-varient binding site motif	A genome-wide identification of E2F-regulated genes in Arabidopsis	51.02%
Matrix_281	TCP13	Not Available	50.90%
Matrix_472	ZN_C2_H2	Not Available	50.80%
Matrix_260	CAMTA3	Not Available	50.76%
Matrix_210	ARR1	Not Available	50.75%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	50.74%
Matrix_216	TCP16	Not Available	50.73%
Matrix_462	ATERF-8	Not Available	50.72%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	50.71%
Matrix_322	NST3; ANAC015; BRN2	Not Available	50.67%
Matrix_339	bHLH104	Not Available	50.57%
Matrix_423	AT3G04030	Not Available	50.57%
Matrix_469	NAC041; NAC083	Not Available	50.49%
Matrix_79	FUS3	Not Available	50.41%
Matrix_491	AT1G68670; AT3G25790	Not Available	50.31%
Matrix_4	ARR14	Not Available	50.18%
Matrix_141	AT3G25990	Not Available	50.15%
Matrix_23	ANAC46	Not Available	50.13%
Matrix_221	SPL7	Not Available	50.10%
Motif_564	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.01%