PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_45
Name: DRN
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_147	ERF3; AT1G80580	Not Available	95.25%
Matrix_484	ATERF13	Not Available	91.84%
Matrix_295	ERF1	Not Available	88.74%
Matrix_517	ERF12	Not Available	85.34%
Matrix_360	ORA59	Not Available	84.79%
Matrix_5	AT5G51190; ERF104	Not Available	82.51%
Matrix_344	ATERF15; AT4G18450	Not Available	77.65%
Matrix_506	DRNL; ATERF-4	Not Available	72.66%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	72.40%
Matrix_478	AT1G01250	Not Available	71.01%
Matrix_493	AT1G22985; AT1G71130	Not Available	70.84%
Matrix_91	CRF3	Not Available	70.52%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	70.45%
Matrix_261	ATERF-1	Not Available	70.30%
Matrix_86	CRF5; CRF6; CRF4	Not Available	70.16%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	68.90%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	68.61%
Matrix_426	CRF1; CRF2	Not Available	68.29%
Matrix_321	HRD	Not Available	67.73%
Matrix_234	RAP2.3	Not Available	67.46%
Matrix_343	AT2G33710	Not Available	66.98%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	66.27%
Matrix_473	RRTF1	Not Available	66.23%
Matrix_378	ATERF1	Not Available	65.83%
Matrix_50	ATERF14; AT5G43410	Not Available	65.59%
Matrix_138	RRTF1	Not Available	65.46%
Matrix_363	RAP2.3	Not Available	65.00%
Matrix_462	ATERF-8	Not Available	64.31%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	63.54%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	63.48%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	63.48%
Matrix_288	RAP2.3	Not Available	63.42%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	63.42%
Matrix_252	RAP2.6	Not Available	63.41%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	62.90%
Matrix_146	ORA47	Not Available	62.86%
Matrix_406	ATERF-7	Not Available	62.36%
Matrix_224	ERF1	Not Available	61.79%
Matrix_409	DEAR3	Not Available	61.45%
Matrix_119	RRTF1	Not Available	61.29%
Matrix_374	AT5G07580; AT5G61590	Not Available	60.96%
Matrix_272	DEAR4	Not Available	60.93%
Matrix_334	AT3G23230	Not Available	60.23%
Matrix_277	RAP2.6	Not Available	60.08%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	59.73%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	59.54%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	59.01%
Matrix_355	ERF10; ERF11	Not Available	58.95%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	58.74%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	58.46%
Matrix_448	ATERF6	Not Available	58.31%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	58.11%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	57.69%
Matrix_190	ATERF1	Not Available	57.32%
Matrix_57	WIN1; SHN3; SHN2	Not Available	57.06%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	57.03%
Matrix_433	ATERF1	Not Available	57.03%
Matrix_387	ORA47	Not Available	56.96%
Matrix_287	ERF2	Not Available	56.26%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	55.76%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	55.12%
Matrix_79	FUS3	Not Available	54.97%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	54.71%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	54.50%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	54.47%
Matrix_490	AtMYB77; ATMYB44	Not Available	53.78%
Motif_353	HEXAMERATH4	hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	53.75%
Matrix_135	ABI3	Not Available	53.68%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	52.09%
Matrix_346	AtMYB70; MYB73	Not Available	52.04%
Motif_218	ABRERATCAL	ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE	52.00%
Motif_312	OCTAMERMOTIFTAH3H4	Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes	51.85%
Matrix_101	ERF5	Not Available	51.72%
Motif_392	PALBOXAPC	Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L	51.66%
Matrix_450	SPL7	Not Available	51.64%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.57%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	51.42%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.98%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	50.94%
Matrix_362	DEAR3	Not Available	50.87%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	50.84%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	50.81%
Matrix_296	GBF2	Not Available	50.77%
Motif_33	ACGTCBOX	C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site	50.71%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	50.62%
Matrix_221	SPL7	Not Available	50.61%
Matrix_78	AT3G45610	Not Available	50.59%
Motif_591	CBFHV	Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)	50.57%
Matrix_188	SPL4	Not Available	50.56%
Motif_459	SORLIP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.17%