Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 95.43% |
Matrix_323 | BIM3 | Not Available | | 95.12% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 93.17% |
Matrix_330 | MYC2; TT8 | Not Available | | 92.50% |
Matrix_465 | MYC4 | Not Available | | 91.71% |
Matrix_120 | BEE2 | Not Available | | 91.43% |
Matrix_389 | ILR3 | Not Available | | 89.07% |
Matrix_129 | ABF1 | Not Available | | 84.49% |
Matrix_332 | SPT; ALC | Not Available | | 81.38% |
Matrix_247 | PIF3 | Not Available | | 80.30% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 80.00% |
Matrix_122 | ABF1; AREB2 | Not Available | | 79.06% |
Matrix_339 | bHLH104 | Not Available | | 78.56% |
Matrix_480 | BES1 | Not Available | | 75.76% |
Matrix_456 | bZIP60 | Not Available | | 75.60% |
Matrix_233 | MYC3 | Not Available | | 75.22% |
Matrix_369 | AT2G18300 | Not Available | | 73.66% |
Matrix_55 | PIF3 | Not Available | | 73.64% |
Matrix_273 | ANAC55 | Not Available | | 73.46% |
Matrix_104 | PI | Not Available | | 72.99% |
Matrix_116 | ANAC55 | Not Available | | 72.94% |
Matrix_437 | MYC2 | Not Available | | 72.84% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 72.57% |
Matrix_420 | ANAC58 | Not Available | | 72.55% |
Matrix_296 | GBF2 | Not Available | | 72.20% |
Matrix_320 | MYC4 | Not Available | | 72.13% |
Matrix_150 | UNE10; PIF7 | Not Available | | 71.90% |
Matrix_365 | AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1 | Not Available | | 71.88% |
Motif_112 | GBOX10NT | One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen | | 71.57% |
Motif_418 | ABRE2HVA22 | ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG) | | 71.49% |
Matrix_60 | AT1G01260; AT5G57150 | Not Available | | 71.39% |
Matrix_80 | BIM1 | Not Available | | 70.65% |
Matrix_113 | ABI5 | Not Available | | 70.36% |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 70.21% |
Motif_542 | ABI5; AtMYC2; HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 69.87% |
Motif_300 | ACGTROOT1; HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | | 69.69% |
Matrix_476 | bHLH115; bHLH34 | Not Available | | 69.64% |
Matrix_156 | POC1 | Not Available | | 69.62% |
Motif_197 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 69.62% |
Matrix_472 | ZN_C2_H2 | Not Available | | 69.57% |
Matrix_331 | GBF1 | Not Available | | 69.56% |
Matrix_7 | PIF4 | Not Available | | 69.46% |
Motif_400 | ABREAZMRAB28 | ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues | | 69.44% |
Motif_252 | GBOXPC | G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner | | 69.31% |
Motif_498 | SGBFGMGMAUX28 | bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter | | 69.18% |
Matrix_511 | AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180 | Not Available | | 69.15% |
Matrix_188 | SPL4 | Not Available | | 69.10% |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 69.05% |
Motif_599 | LREBOXIIPCCHS1; HY5 | BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 69.00% |
Matrix_440 | LFY | Not Available | | 68.89% |
Matrix_174 | ZAT2 | Not Available | | 68.89% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 68.84% |
Matrix_109 | GBF3 | Not Available | | 68.82% |
Motif_571 | GBOXSORBCS1 | G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots | | 68.62% |
Matrix_145 | GBF4; AT5G44080 | Not Available | | 68.55% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 68.53% |
Matrix_307 | RGL2; RGL3 | Not Available | | 68.04% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 67.96% |
Matrix_134 | ABF1 | Not Available | | 67.77% |
Matrix_23 | ANAC46 | Not Available | | 67.51% |
Matrix_64 | PIF5 | Not Available | | 67.38% |
Matrix_260 | CAMTA3 | Not Available | | 67.35% |
Matrix_141 | AT3G25990 | Not Available | | 67.26% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 66.83% |
Matrix_282 | bZIP60 | Not Available | | 66.78% |
Matrix_90 | BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915 | Not Available | | 66.73% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 66.71% |
Matrix_171 | LBD3; LBD4 | Not Available | | 66.63% |
Matrix_228 | TGA2 | Not Available | | 66.10% |
Matrix_438 | AtbZIP63 | Not Available | | 66.08% |
Motif_244 | ABRE-like binding site motif | Not Available | | 66.06% |
Matrix_153 | AP2 | Not Available | | 65.78% |
Matrix_151 | ASIL1 | Not Available | | 65.68% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 65.11% |
Matrix_111 | ABF3 | Not Available | | 64.78% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 64.55% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 64.28% |
Matrix_373 | E2FE | Not Available | | 64.10% |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | | 63.35% |
Matrix_1 | TOE2 | Not Available | | 63.21% |
Matrix_422 | TOE1 | Not Available | | 62.97% |
Matrix_221 | SPL7 | Not Available | | 62.97% |
Motif_211 | ABREMOTIFIOSRAB16B | Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 62.82% |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | | 62.58% |
Motif_162 | ABRE3HVA22 | ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1 | | 62.51% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 62.46% |
Motif_573 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 62.44% |
Matrix_186 | FHY3 | Not Available | | 62.35% |
Matrix_416 | ASL5 | Not Available | | 62.24% |
Motif_275 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 62.19% |
Motif_56 | O2F3BE2S1 | opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box | | 62.13% |
Matrix_265 | NGA3 | Not Available | | 62.09% |
Matrix_193 | RAV1 | Not Available | | 62.09% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 61.97% |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | | 61.89% |
Matrix_187 | CDC5 | Not Available | | 61.89% |
Matrix_349 | CDC5 | Not Available | | 61.89% |
Motif_338 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 61.85% |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | | 61.76% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 61.75% |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | | 61.67% |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 61.60% |
Motif_644 | ABREDISTBBNNAPA | dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | | 61.57% |
Motif_120 | ABRETAEM | ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC | | 61.57% |
Matrix_181 | Dof5.7 | Not Available | | 61.56% |
Motif_617 | ABRE3HVA1 | ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response | | 61.53% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 61.47% |
Motif_566 | AREB1; AREB2 | Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 61.43% |
Matrix_128 | TGA2 | Not Available | | 61.36% |
Motif_251 | SUP | The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif | | 61.10% |
Motif_53 | ABREA2HVA1 | A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3 | | 61.08% |
Matrix_333 | GATA3 | Not Available | | 61.00% |
Motif_499 | AtMYC2 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth | | 60.99% |
Matrix_70 | GATA26 | Not Available | | 60.92% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 60.90% |
Matrix_65 | POC1; PIL1 | Not Available | | 60.83% |
Motif_665 | ACEATCHS | ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system | | 60.81% |
Matrix_355 | ERF10; ERF11 | Not Available | | 60.73% |
Motif_421 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 60.71% |
Motif_406 | ABREBZMRAB28 | ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues | | 60.56% |
Matrix_53 | MYC3 | Not Available | | 60.55% |
Matrix_264 | ATAREB1 | Not Available | | 60.50% |
Matrix_204 | WOX13 | Not Available | | 60.41% |
Motif_124 | ABREMOTIFIIIOSRAB16B | Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 60.33% |
Motif_407 | CE3OSOSEM | CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 60.30% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 60.29% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 60.23% |
Matrix_311 | TGA1 | Not Available | | 60.18% |
Matrix_178 | HSFB2A | Not Available | | 60.04% |
Motif_202 | OPAQUE2ZM22Z | Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02 | | 59.95% |
Matrix_137 | SPL1; SPL12 | Not Available | | 59.85% |
Matrix_475 | AT5G64220 | Not Available | | 59.82% |
Matrix_8 | KAN1 | Not Available | | 59.80% |
Matrix_139 | OBF5 | Not Available | | 59.75% |
Motif_237 | O2F1BE2S1 | opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box | | 59.69% |
Motif_598 | SORLIP3AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 59.68% |
Motif_638 | ABRE binding site motif | Not Available | | 59.67% |
Matrix_135 | ABI3 | Not Available | | 59.53% |
Matrix_101 | ERF5 | Not Available | | 59.46% |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | | 59.41% |
Matrix_77 | PRR5 | Not Available | | 59.40% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 59.24% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 59.18% |
Matrix_477 | RAV1 | Not Available | | 59.18% |
Matrix_467 | RAV1 | Not Available | | 59.18% |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 59.18% |
Matrix_166 | TGA4 | Not Available | | 59.15% |
Matrix_432 | AT1G77920 | Not Available | | 58.85% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 58.72% |
Matrix_27 | ATAIB; ATNIG1 | Not Available | | 58.65% |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | | 58.59% |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 58.59% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 58.52% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 58.50% |
Motif_388 | CPRFPCCHS; AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 58.40% |
Motif_232 | ABADESI1 | Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1 | | 58.32% |
Matrix_164 | AT1G02030; AT2G45120; AZF2; AT3G60580 | Not Available | | 58.31% |
Motif_158 | ZDNAFORMINGATCAB1 | Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene | | 58.26% |
Matrix_328 | AT1G76580 | Not Available | | 58.22% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 58.21% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 58.19% |
Matrix_321 | HRD | Not Available | | 58.08% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 58.07% |
Matrix_421 | GLK1 | Not Available | | 58.02% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 57.97% |
Motif_483 | ABREMOTIFAOSOSEM | motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 57.92% |
Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 57.83% |
Matrix_227 | AT1G64620 | Not Available | | 57.76% |
Matrix_41 | anac058 | Not Available | | 57.73% |
Matrix_255 | cdf3 | Not Available | | 57.71% |
Motif_516 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 57.71% |
Matrix_406 | ATERF-7 | Not Available | | 57.66% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 57.63% |
Matrix_37 | GATA27 | Not Available | | 57.51% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 57.43% |
Matrix_79 | FUS3 | Not Available | | 57.41% |
Matrix_4 | ARR14 | Not Available | | 57.40% |
Matrix_210 | ARR1 | Not Available | | 57.37% |
Matrix_69 | AT2G03500 | Not Available | | 57.21% |
Matrix_352 | LEC2 | Not Available | | 57.17% |
Matrix_97 | APRR2 | Not Available | | 57.12% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 57.04% |
Matrix_287 | ERF2 | Not Available | | 57.01% |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | | 56.90% |
Matrix_409 | DEAR3 | Not Available | | 56.81% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 56.80% |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | | 56.78% |
Matrix_436 | AT3G49930; AZF1 | Not Available | | 56.65% |
Matrix_308 | INO | Not Available | | 56.63% |
Matrix_91 | CRF3 | Not Available | | 56.58% |
Matrix_379 | RHL41 | Not Available | | 56.50% |
Matrix_211 | MYB3 | Not Available | | 56.41% |
Matrix_87 | AT1G19000 | Not Available | | 56.36% |
Matrix_162 | AtPHR1 | Not Available | | 56.24% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 56.22% |
Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 56.05% |
Matrix_446 | LBD16 | Not Available | | 56.02% |
Matrix_484 | ATERF13 | Not Available | | 56.00% |
Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 55.75% |
Matrix_452 | MYB46 | Not Available | | 55.71% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 55.66% |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 55.66% |
Matrix_45 | DRN | Not Available | | 55.65% |
Matrix_462 | ATERF-8 | Not Available | | 55.52% |
Matrix_17 | WRKY22 | Not Available | | 55.46% |
Motif_179 | CACGTGMOTIF; BES1; PIF4; PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 55.46% |
Matrix_261 | ATERF-1 | Not Available | | 55.44% |
Matrix_393 | REM1 | Not Available | | 55.40% |
Matrix_463 | HAT3.1 | Not Available | | 55.36% |
Matrix_415 | WRKY27 | Not Available | | 55.33% |
Matrix_362 | DEAR3 | Not Available | | 55.24% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 55.18% |
Matrix_21 | HSFC1 | Not Available | | 55.16% |
Matrix_31 | SPL1 | Not Available | | 55.13% |
Matrix_236 | CCA1 | Not Available | | 55.11% |
Matrix_423 | AT3G04030 | Not Available | | 55.02% |
Motif_384 | SITEIOSPCNA | Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation | | 54.94% |
Matrix_257 | NAC050; ANAC051; anac057; NAC2 | Not Available | | 54.89% |
Matrix_239 | AT5G04390 | Not Available | | 54.89% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 54.88% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 54.85% |
Motif_250 | ACGTOSGLUB1 | ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression | | 54.83% |
Motif_639 | WRKY18 | Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis | | 54.81% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 54.79% |
Matrix_425 | TIFY2A | Not Available | | 54.71% |
Matrix_126 | RBE | Not Available | | 54.67% |
Matrix_46 | AT4G21895 | Not Available | | 54.67% |
Matrix_469 | NAC041; NAC083 | Not Available | | 54.65% |
Matrix_450 | SPL7 | Not Available | | 54.64% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 54.64% |
Motif_507 | ABASEED1 | ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif | | 54.56% |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | | 54.54% |
Motif_535 | ACIPVPAL2 | ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene | | 54.54% |
Matrix_218 | TIFY2B; TIFY1 | Not Available | | 54.50% |
Matrix_490 | AtMYB77; ATMYB44 | Not Available | | 54.49% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 54.49% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 54.42% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 54.41% |
Matrix_460 | NAM; anac025; ATNAC2 | Not Available | | 54.41% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 54.23% |
Matrix_433 | ATERF1 | Not Available | | 54.18% |
Matrix_346 | AtMYB70; MYB73 | Not Available | | 54.18% |
Matrix_274 | EDF3 | Not Available | | 54.08% |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | | 53.98% |
Matrix_343 | AT2G33710 | Not Available | | 53.94% |
Matrix_334 | AT3G23230 | Not Available | | 53.92% |
Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 53.83% |
Matrix_177 | ADOF2 | Not Available | | 53.80% |
Matrix_209 | RAP2.6 | Not Available | | 53.77% |
Matrix_212 | ATHB-12 | Not Available | | 53.71% |
Matrix_61 | ATCBF3 | Not Available | | 53.69% |
Matrix_336 | AT5G08520 | Not Available | | 53.66% |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | | 53.64% |
Matrix_85 | SPL5 | Not Available | | 53.64% |
Motif_107 | O2F2BE2S1 | opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome | | 53.64% |
Matrix_12 | EIN3; EIL2 | Not Available | | 53.57% |
Motif_82 | ACGTSEED3 | ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site | | 53.57% |
Matrix_360 | ORA59 | Not Available | | 53.54% |
Matrix_361 | AT1G25550 | Not Available | | 53.53% |
Matrix_92 | AT1G33760 | Not Available | | 53.49% |
Matrix_84 | AtGRF6 | Not Available | | 53.48% |
Motif_295 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 53.48% |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | | 53.46% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 53.42% |
Matrix_277 | RAP2.6 | Not Available | | 53.42% |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | | 53.39% |
Matrix_505 | GATA8 | Not Available | | 53.39% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 53.38% |
Motif_67 | LS5ATPR1 | LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors | | 53.38% |
Matrix_411 | DOF5.6 | Not Available | | 53.37% |
Motif_17 | AUXRETGA1GMGH3 | TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts | | 53.32% |
Motif_528 | ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 53.31% |
Matrix_115 | AGL15 | Not Available | | 53.23% |
Motif_154 | ABREBNNAPA | ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex | | 53.19% |
Matrix_142 | ZFP8 | Not Available | | 53.13% |
Matrix_399 | TGA1 | Not Available | | 53.13% |
Matrix_404 | OBP4 | Not Available | | 53.12% |
Motif_238 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 53.08% |
Motif_74 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 53.05% |
Motif_24 | CAMTA3 | Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance | | 53.01% |
Matrix_324 | AT2G01060 | Not Available | | 52.99% |
Matrix_75 | WRKY29 | Not Available | | 52.98% |
Matrix_225 | MYB52 | Not Available | | 52.96% |
Matrix_226 | GATA1 | Not Available | | 52.87% |
Motif_19 | AAGACGTAGATACL12 | Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT) | | 52.87% |
Matrix_516 | ANAC038; ANAC079 | Not Available | | 52.87% |
Matrix_173 | ZAP1 | Not Available | | 52.76% |
Matrix_286 | GATA7 | Not Available | | 52.75% |
Matrix_431 | ATHB21; HB-3 | Not Available | | 52.64% |
Matrix_448 | ATERF6 | Not Available | | 52.55% |
Matrix_518 | AT2G21230 | Not Available | | 52.41% |
Matrix_78 | AT3G45610 | Not Available | | 52.41% |
Matrix_500 | WRKY43 | Not Available | | 52.40% |
Motif_214 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 52.33% |
Matrix_9 | AT5G04760 | Not Available | | 52.28% |
Matrix_397 | GT2L | Not Available | | 52.24% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 52.23% |
Matrix_398 | TBP2; ATTRB2 | Not Available | | 52.21% |
Motif_234 | ABADESI2 | Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP | | 52.20% |
Matrix_403 | BZR1 | Not Available | | 52.15% |
Matrix_93 | YAB5 | Not Available | | 52.11% |
Matrix_295 | ERF1 | Not Available | | 52.11% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 52.08% |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | | 52.08% |
Motif_330 | ANAERO5CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator | | 52.07% |
Motif_314 | HY5AT | G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl | | 52.06% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 52.06% |
Matrix_443 | AGL15 | Not Available | | 52.03% |
Matrix_167 | ZAT6 | Not Available | | 51.98% |
Matrix_272 | DEAR4 | Not Available | | 51.90% |
Matrix_489 | RAV1 | Not Available | | 51.89% |
Matrix_380 | ATMYR1 | Not Available | | 51.88% |
Matrix_11 | TRFL5 | Not Available | | 51.88% |
Matrix_165 | KNAT1 | Not Available | | 51.87% |
Matrix_249 | WRKY11 | Not Available | | 51.74% |
Motif_616 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 51.69% |
Motif_589 | ARECOREZMGAPC4 | Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction | | 51.69% |
Motif_2 | ACGTSEED2 | ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02 | | 51.67% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 51.58% |
Matrix_424 | MYB59 | Not Available | | 51.58% |
Matrix_99 | DOF4.7 | Not Available | | 51.55% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 51.55% |
Matrix_234 | RAP2.3 | Not Available | | 51.53% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 51.53% |
Matrix_429 | KAN4 | Not Available | | 51.53% |
Matrix_157 | LHY; RVE2 | Not Available | | 51.51% |
Matrix_253 | ETT | Not Available | | 51.51% |
Matrix_354 | AHL12 | Not Available | | 51.50% |
Matrix_146 | ORA47 | Not Available | | 51.41% |
Matrix_512 | HAT3 | Not Available | | 51.40% |
Matrix_83 | PRR5 | Not Available | | 51.35% |
Matrix_197 | NAP | Not Available | | 51.24% |
Motif_133 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 51.23% |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 50.88% |
Matrix_347 | WOX14; WOX10 | Not Available | | 50.87% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 50.87% |
Matrix_492 | ETT | Not Available | | 50.83% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 50.82% |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | | 50.73% |
Matrix_278 | AtbZIP44 | Not Available | | 50.70% |
Matrix_3 | WRKY48 | Not Available | | 50.62% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 50.55% |
Matrix_190 | ATERF1 | Not Available | | 50.52% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 50.50% |
Matrix_224 | ERF1 | Not Available | | 50.49% |
Matrix_337 | MYB46 | Not Available | | 50.47% |
Matrix_241 | HB-1; AT5G44180 | Not Available | | 50.46% |
Matrix_72 | CDF2 | Not Available | | 50.43% |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 50.42% |
Matrix_363 | RAP2.3 | Not Available | | 50.40% |
Matrix_396 | AP3 | Not Available | | 50.39% |
Matrix_502 | AT3G13040 | Not Available | | 50.38% |
Matrix_258 | WOX13 | Not Available | | 50.33% |
Matrix_315 | MYB111 | Not Available | | 50.20% |
Matrix_176 | MYB98 | Not Available | | 50.20% |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | | 50.16% |
Matrix_302 | HAT1; HAT2 | Not Available | | 50.13% |
Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 50.10% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 50.07% |
Matrix_214 | AP1 | Not Available | | 50.07% |
Matrix_388 | SNZ; SMZ; TOE2 | Not Available | | 50.06% |
Motif_9 | RBENTGA3 | rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs | | 50.01% |