Matrix_433 | ATERF1 | Not Available | | 88.69% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 84.18% |
Matrix_224 | ERF1 | Not Available | | 83.26% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 80.42% |
Matrix_355 | ERF10; ERF11 | Not Available | | 78.81% |
Matrix_363 | RAP2.3 | Not Available | | 78.35% |
Matrix_288 | RAP2.3 | Not Available | | 78.19% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 77.38% |
Matrix_61 | ATCBF3 | Not Available | | 77.22% |
Matrix_409 | DEAR3 | Not Available | | 76.43% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 76.07% |
Matrix_138 | RRTF1 | Not Available | | 75.63% |
Matrix_119 | RRTF1 | Not Available | | 74.06% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 74.04% |
Matrix_92 | AT1G33760 | Not Available | | 73.37% |
Matrix_277 | RAP2.6 | Not Available | | 73.10% |
Matrix_91 | CRF3 | Not Available | | 72.77% |
Matrix_244 | DREB2C | Not Available | | 72.60% |
Matrix_394 | DREB_U | Not Available | | 72.29% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 71.52% |
Matrix_385 | DEAR4 | Not Available | | 70.82% |
Matrix_261 | ATERF-1 | Not Available | | 69.88% |
Matrix_426 | CRF1; CRF2 | Not Available | | 69.51% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 69.21% |
Matrix_492 | ETT | Not Available | | 69.20% |
Matrix_484 | ATERF13 | Not Available | | 68.64% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 68.31% |
Matrix_321 | HRD | Not Available | | 68.24% |
Matrix_151 | ASIL1 | Not Available | | 68.02% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 67.99% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 67.61% |
Matrix_171 | LBD3; LBD4 | Not Available | | 67.55% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 67.34% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 66.99% |
Matrix_360 | ORA59 | Not Available | | 66.71% |
Matrix_45 | DRN | Not Available | | 66.65% |
Matrix_253 | ETT | Not Available | | 66.59% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 66.41% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 66.32% |
Motif_509 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 66.06% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 65.88% |
Matrix_234 | RAP2.3 | Not Available | | 65.47% |
Motif_144 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 65.46% |
Matrix_295 | ERF1 | Not Available | | 65.33% |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 65.32% |
Matrix_252 | RAP2.6 | Not Available | | 64.32% |
Matrix_378 | ATERF1 | Not Available | | 64.21% |
Matrix_343 | AT2G33710 | Not Available | | 64.17% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 63.98% |
Matrix_272 | DEAR4 | Not Available | | 63.53% |
Matrix_473 | RRTF1 | Not Available | | 63.36% |
Matrix_334 | AT3G23230 | Not Available | | 63.09% |
Matrix_462 | ATERF-8 | Not Available | | 62.94% |
Matrix_517 | ERF12 | Not Available | | 62.93% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 62.11% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 62.09% |
Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 62.09% |
Motif_99 | DREB1A; DREB1C; DREB1B | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit | | 62.05% |
Matrix_79 | FUS3 | Not Available | | 61.74% |
Matrix_282 | bZIP60 | Not Available | | 61.61% |
Matrix_260 | CAMTA3 | Not Available | | 61.57% |
Matrix_146 | ORA47 | Not Available | | 61.48% |
Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.40% |
Matrix_406 | ATERF-7 | Not Available | | 61.28% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.26% |
Matrix_135 | ABI3 | Not Available | | 60.90% |
Matrix_475 | AT5G64220 | Not Available | | 60.80% |
Matrix_329 | WRKY12 | Not Available | | 60.80% |
Matrix_456 | bZIP60 | Not Available | | 60.78% |
Matrix_228 | TGA2 | Not Available | | 60.43% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 60.43% |
Matrix_193 | RAV1 | Not Available | | 60.08% |
Matrix_265 | NGA3 | Not Available | | 60.08% |
Matrix_293 | WRKY38 | Not Available | | 60.04% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 59.97% |
Matrix_373 | E2FE | Not Available | | 59.56% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 59.56% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 59.45% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 59.44% |
Matrix_287 | ERF2 | Not Available | | 59.42% |
Matrix_209 | RAP2.6 | Not Available | | 59.34% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 59.23% |
Matrix_500 | WRKY43 | Not Available | | 59.01% |
Matrix_31 | SPL1 | Not Available | | 58.74% |
Matrix_190 | ATERF1 | Not Available | | 58.62% |
Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 58.60% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 58.30% |
Matrix_169 | E2F1 | Not Available | | 58.25% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 58.24% |
Matrix_249 | WRKY11 | Not Available | | 57.90% |
Motif_203 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 57.67% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 57.67% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 57.64% |
Matrix_478 | AT1G01250 | Not Available | | 57.59% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 57.53% |
Matrix_446 | LBD16 | Not Available | | 57.47% |
Matrix_299 | PFG3 | Not Available | | 57.36% |
Matrix_387 | ORA47 | Not Available | | 57.18% |
Motif_219 | E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 57.11% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 56.92% |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | | 56.91% |
Matrix_285 | DDF1 | Not Available | | 56.85% |
Motif_621 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 56.78% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 56.64% |
Matrix_80 | BIM1 | Not Available | | 56.63% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 56.55% |
Matrix_101 | ERF5 | Not Available | | 56.53% |
Matrix_292 | FTQ4 | Not Available | | 56.44% |
Motif_522 | E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 56.28% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 56.23% |
Matrix_376 | WRKY45 | Not Available | | 56.21% |
Motif_394 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 56.07% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 56.07% |
Motif_32 | DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 56.07% |
Matrix_420 | ANAC58 | Not Available | | 56.02% |
Matrix_415 | WRKY27 | Not Available | | 55.92% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 55.88% |
Matrix_173 | ZAP1 | Not Available | | 55.76% |
Matrix_389 | ILR3 | Not Available | | 55.67% |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 55.65% |
Matrix_70 | GATA26 | Not Available | | 55.64% |
Matrix_23 | ANAC46 | Not Available | | 55.58% |
Motif_531 | AP2SV40 | AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 55.51% |
Motif_259 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 55.46% |
Motif_620 | DREB1&2 BS in rd29a | Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor | | 55.38% |
Matrix_315 | MYB111 | Not Available | | 55.32% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 55.15% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 55.13% |
Matrix_197 | NAP | Not Available | | 55.12% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 55.10% |
Matrix_139 | OBF5 | Not Available | | 54.96% |
Matrix_40 | TCP2 | Not Available | | 54.85% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 54.81% |
Motif_74 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 54.72% |
Matrix_296 | GBF2 | Not Available | | 54.66% |
Matrix_335 | HSFB2A | Not Available | | 54.65% |
Matrix_153 | AP2 | Not Available | | 54.60% |
Matrix_504 | WRKY40 | Not Available | | 54.55% |
Matrix_109 | GBF3 | Not Available | | 54.39% |
Matrix_362 | DEAR3 | Not Available | | 54.35% |
Matrix_450 | SPL7 | Not Available | | 54.34% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 54.13% |
Matrix_337 | MYB46 | Not Available | | 54.11% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 54.09% |
Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 54.00% |
Matrix_120 | BEE2 | Not Available | | 53.87% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 53.87% |
Matrix_307 | RGL2; RGL3 | Not Available | | 53.71% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 53.63% |
Matrix_97 | APRR2 | Not Available | | 53.59% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 53.55% |
Matrix_141 | AT3G25990 | Not Available | | 53.47% |
Matrix_84 | AtGRF6 | Not Available | | 53.44% |
Matrix_104 | PI | Not Available | | 53.25% |
Matrix_281 | TCP13 | Not Available | | 53.25% |
Matrix_55 | PIF3 | Not Available | | 53.22% |
Motif_405 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 53.15% |
Matrix_323 | BIM3 | Not Available | | 53.15% |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 53.08% |
Matrix_330 | MYC2; TT8 | Not Available | | 53.01% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 52.99% |
Matrix_332 | SPT; ALC | Not Available | | 52.98% |
Matrix_452 | MYB46 | Not Available | | 52.88% |
Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 52.87% |
Matrix_227 | AT1G64620 | Not Available | | 52.78% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 52.73% |
Matrix_22 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 52.72% |
Matrix_230 | ARR11 | Not Available | | 52.71% |
Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | | 52.71% |
Matrix_455 | MYB111 | Not Available | | 52.67% |
Matrix_188 | SPL4 | Not Available | | 52.66% |
Matrix_465 | MYC4 | Not Available | | 52.61% |
Matrix_37 | GATA27 | Not Available | | 52.59% |
Matrix_113 | ABI5 | Not Available | | 52.55% |
Matrix_449 | BIM2 | Not Available | | 52.55% |
Matrix_348 | AT5G51910 | Not Available | | 52.50% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 52.35% |
Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 52.31% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 52.30% |
Matrix_308 | INO | Not Available | | 52.21% |
Matrix_509 | LEC2 | Not Available | | 52.12% |
Matrix_38 | SPL14 | Not Available | | 52.00% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 51.93% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 51.81% |
Motif_13 | E2F-varient binding site motif | A genome-wide identification of E2F-regulated genes in Arabidopsis | | 51.75% |
Matrix_467 | RAV1 | Not Available | | 51.72% |
Matrix_477 | RAV1 | Not Available | | 51.72% |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 51.72% |
Matrix_393 | REM1 | Not Available | | 51.72% |
Matrix_369 | AT2G18300 | Not Available | | 51.71% |
Matrix_480 | BES1 | Not Available | | 51.64% |
Motif_312 | OCTAMERMOTIFTAH3H4 | Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes | | 51.61% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 51.58% |
Matrix_331 | GBF1 | Not Available | | 51.53% |
Matrix_424 | MYB59 | Not Available | | 51.50% |
Matrix_130 | TCP16 | Not Available | | 51.49% |
Matrix_489 | RAV1 | Not Available | | 51.48% |
Matrix_273 | ANAC55 | Not Available | | 51.43% |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 51.22% |
Matrix_116 | ANAC55 | Not Available | | 51.12% |
Matrix_122 | ABF1; AREB2 | Not Available | | 51.09% |
Matrix_186 | FHY3 | Not Available | | 50.94% |
Matrix_502 | AT3G13040 | Not Available | | 50.92% |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | | 50.77% |
Matrix_481 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 50.77% |
Matrix_148 | WRKY60 | Not Available | | 50.57% |
Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | | 50.40% |
Matrix_52 | ZAT18 | Not Available | | 50.26% |
Matrix_257 | NAC050; ANAC051; anac057; NAC2 | Not Available | | 50.24% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 50.21% |
Matrix_211 | MYB3 | Not Available | | 50.20% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 50.15% |
Matrix_69 | AT2G03500 | Not Available | | 50.14% |
Matrix_336 | AT5G08520 | Not Available | | 50.14% |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | | 50.13% |
Matrix_294 | MEE35 | Not Available | | 50.08% |
Matrix_42 | AT2G45680 | Not Available | | 50.01% |