PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_442
Name: AT5G62260
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	69.03%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	67.91%
Matrix_262	ATGRP2B; CSDP2	Not Available	63.50%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	62.17%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	61.80%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	61.49%
Matrix_112	TBP2; TFIID-1	Not Available	61.38%
Matrix_100	AT1G48610	Not Available	59.89%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	59.04%
Matrix_519	ATDOF2.4	Not Available	58.75%
Matrix_114	EPR1; AT3G10113	Not Available	58.70%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	58.62%
Matrix_185	AHL25	Not Available	57.06%
Matrix_32	AHL25	Not Available	56.65%
Matrix_444	AT1G19485; AT4G17950	Not Available	56.58%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	56.49%
Motif_410	ANAERO1CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator	56.21%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	56.02%
Matrix_88	AHL12	Not Available	55.99%
Matrix_81	YAB1	Not Available	55.68%
Matrix_96	TMO6	Not Available	55.39%
Matrix_354	AHL12	Not Available	55.25%
Matrix_54	AHL20	Not Available	55.25%
Matrix_391	AHL20	Not Available	54.93%
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	54.80%
Matrix_125	AHL12	Not Available	54.52%
Matrix_248	ZFP5	Not Available	54.13%
Matrix_168	AHL25	Not Available	53.92%
Motif_155	NODCON1GM	One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules	53.86%
Matrix_341	HMGA	Not Available	53.81%
Matrix_521	AHL20	Not Available	53.76%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	53.72%
Matrix_177	ADOF2	Not Available	53.64%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	53.52%
Matrix_78	AT3G45610	Not Available	53.30%
Matrix_411	DOF5.6	Not Available	53.12%
Matrix_46	AT4G21895	Not Available	53.04%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	53.02%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	52.91%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	52.87%
Matrix_241	HB-1; AT5G44180	Not Available	52.66%
Matrix_160	RVE1	Not Available	52.02%
Motif_682	GT1GMSCAM4	GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression	51.99%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.88%
Motif_609	AP2	The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element	51.43%
Matrix_142	ZFP8	Not Available	51.31%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	51.11%
Matrix_513	SOL1; TSO1; TCX2	Not Available	51.01%
Matrix_170	AT5G47660	Not Available	51.00%
Matrix_383	CCA1	Not Available	50.94%
Matrix_487	AT1G29160	Not Available	50.93%
Matrix_35	YAB5; YAB3	Not Available	50.68%
Matrix_512	HAT3	Not Available	50.11%