PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_439
Name: AP3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_115	AGL15	Not Available	76.82%
Matrix_269	FHY3/FAR1	Not Available	76.72%
Matrix_48	PI	Not Available	72.29%
Matrix_219	AGL15	Not Available	71.77%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	71.57%
Matrix_9	AT5G04760	Not Available	70.14%
Matrix_399	TGA1	Not Available	66.79%
Matrix_453	EIL3	Not Available	65.39%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	64.28%
Matrix_258	WOX13	Not Available	64.28%
Matrix_393	REM1	Not Available	64.27%
Matrix_336	AT5G08520	Not Available	63.41%
Matrix_176	MYB98	Not Available	63.11%
Matrix_311	TGA1	Not Available	62.99%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	62.21%
Matrix_128	TGA2	Not Available	62.16%
Matrix_495	HD-GL2-1; ANL2	Not Available	62.14%
Matrix_157	LHY; RVE2	Not Available	61.92%
Matrix_4	ARR14	Not Available	61.83%
Matrix_210	ARR1	Not Available	61.68%
Matrix_457	TGA2	Not Available	61.34%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	60.94%
Matrix_166	TGA4	Not Available	60.72%
Matrix_6	AT1G70000	Not Available	60.64%
Matrix_148	WRKY60	Not Available	60.35%
Matrix_431	ATHB21; HB-3	Not Available	60.16%
Matrix_29	AP1	Not Available	60.13%
Matrix_271	AT3G16350	Not Available	60.11%
Matrix_491	AT1G68670; AT3G25790	Not Available	60.05%
Matrix_74	LFY	Not Available	59.83%
Matrix_83	PRR5	Not Available	59.77%
Matrix_432	AT1G77920	Not Available	59.68%
Matrix_106	AT5G47390	Not Available	59.63%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	59.55%
Matrix_97	APRR2	Not Available	58.98%
Matrix_114	EPR1; AT3G10113	Not Available	58.97%
Motif_362	TGA2 octamer	palindromic octamer found enriched in chip-chip regions for TGA2	58.82%
Matrix_249	WRKY11	Not Available	58.79%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	58.63%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	58.58%
Matrix_75	WRKY29	Not Available	58.45%
Matrix_3	WRKY48	Not Available	58.38%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	58.33%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	58.31%
Matrix_329	WRKY12	Not Available	58.30%
Matrix_69	AT2G03500	Not Available	58.29%
Matrix_81	YAB1	Not Available	58.26%
Matrix_206	CUC1; ANAC100	Not Available	58.21%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	58.17%
Matrix_382	AT3G04850	Not Available	58.16%
Matrix_324	AT2G01060	Not Available	58.12%
Motif_11	L4DCPAL1	L4 element, found in PAL1 promoter in carrot (Daucus carota), is a UV-B responsive element; L4 contains Box L-like sequence (TCCAACCA)	57.97%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	57.97%
Matrix_361	AT1G25550	Not Available	57.95%
Matrix_383	CCA1	Not Available	57.94%
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	57.94%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	57.88%
Matrix_122	ABF1; AREB2	Not Available	57.87%
Matrix_500	WRKY43	Not Available	57.87%
Matrix_16	AT3G04450; PHL1	Not Available	57.69%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	57.68%
Matrix_12	EIN3; EIL2	Not Available	57.64%
Matrix_61	ATCBF3	Not Available	57.63%
Matrix_41	anac058	Not Available	57.44%
Motif_38	RSEPVGRP1	RSE (root-specific element) of bean GRP1.8 gene; consensus sequence	57.38%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	57.36%
Matrix_102	WRKY21	Not Available	57.35%
Matrix_17	WRKY22	Not Available	57.23%
Matrix_160	RVE1	Not Available	57.23%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	57.23%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	57.01%
Matrix_293	WRKY38	Not Available	56.97%
Matrix_384	ATWRKY17	Not Available	56.96%
Matrix_237	MYB55	Not Available	56.96%
Matrix_430	TOE2	Not Available	56.94%
Matrix_469	NAC041; NAC083	Not Available	56.80%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	56.77%
Matrix_370	WRKY50; WRKY51	Not Available	56.72%
Matrix_162	AtPHR1	Not Available	56.71%
Matrix_39	AP1	Not Available	56.66%
Matrix_196	TCP20; AT5G41030	Not Available	56.65%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	56.64%
Matrix_298	RAV1	Not Available	56.53%
Matrix_413	RAV1	Not Available	56.53%
Matrix_333	GATA3	Not Available	56.48%
Matrix_352	LEC2	Not Available	56.40%
Matrix_499	ARR18	Not Available	56.31%
Matrix_220	WRKY18	Not Available	56.15%
Matrix_203	GATA9; GATA12	Not Available	56.13%
Matrix_38	SPL14	Not Available	56.07%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	56.03%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	55.96%
Motif_668	TCA1MOTIF	TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter	55.94%
Matrix_195	GATA2; GATA4	Not Available	55.91%
Matrix_435	ATHB51	Not Available	55.89%
Matrix_408	GATA12	Not Available	55.87%
Matrix_444	AT1G19485; AT4G17950	Not Available	55.86%
Matrix_240	AT4G29000	Not Available	55.84%
Matrix_80	BIM1	Not Available	55.72%
Matrix_8	KAN1	Not Available	55.70%
Matrix_51	LFY	Not Available	55.60%
Matrix_286	GATA7	Not Available	55.54%
Matrix_168	AHL25	Not Available	55.46%
Matrix_226	GATA1	Not Available	55.40%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	55.39%
Matrix_50	ATERF14; AT5G43410	Not Available	55.38%
Matrix_328	AT1G76580	Not Available	55.29%
Matrix_418	KNAT6; KNAT2	Not Available	55.09%
Matrix_427	ZAT14	Not Available	55.05%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	55.02%
Matrix_392	ARR2	Not Available	55.01%
Matrix_143	GATA14; GATA6; GATA5	Not Available	54.97%
Matrix_32	AHL25	Not Available	54.94%
Matrix_376	WRKY45	Not Available	54.87%
Matrix_52	ZAT18	Not Available	54.58%
Matrix_87	AT1G19000	Not Available	54.55%
Matrix_421	GLK1	Not Available	54.53%
Matrix_523	FUSCA3	Not Available	54.52%
Matrix_461	ATHB12	Not Available	54.44%
Matrix_204	WOX13	Not Available	54.41%
Matrix_197	NAP	Not Available	54.40%
Matrix_489	RAV1	Not Available	54.26%
Matrix_265	NGA3	Not Available	54.22%
Matrix_193	RAV1	Not Available	54.22%
Matrix_151	ASIL1	Not Available	54.14%
Matrix_212	ATHB-12	Not Available	54.09%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	54.08%
Matrix_93	YAB5	Not Available	53.96%
Matrix_456	bZIP60	Not Available	53.96%
Matrix_182	ATHB6	Not Available	53.95%
Matrix_70	GATA26	Not Available	53.82%
Matrix_205	AGL15	Not Available	53.81%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	53.77%
Matrix_480	BES1	Not Available	53.76%
Matrix_380	ATMYR1	Not Available	53.76%
Matrix_109	GBF3	Not Available	53.74%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	53.71%
Matrix_335	HSFB2A	Not Available	53.67%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	53.64%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	53.64%
Matrix_224	ERF1	Not Available	53.58%
Motif_676	RNFG1OS	RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS	53.56%
Matrix_175	Dof5.7	Not Available	53.56%
Matrix_259	AT1G50680; AT1G51120	Not Available	53.51%
Matrix_433	ATERF1	Not Available	53.50%
Matrix_410	TOE2	Not Available	53.48%
Matrix_302	HAT1; HAT2	Not Available	53.46%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	53.45%
Matrix_308	INO	Not Available	53.31%
Matrix_440	LFY	Not Available	53.25%
Matrix_92	AT1G33760	Not Available	53.25%
Matrix_120	BEE2	Not Available	53.19%
Matrix_465	MYC4	Not Available	53.17%
Matrix_67	GLK1	Not Available	53.17%
Matrix_355	ERF10; ERF11	Not Available	53.13%
Matrix_409	DEAR3	Not Available	53.12%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	53.11%
Motif_301	SPHZMC1	Sph element found in the maize C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	53.06%
Matrix_330	MYC2; TT8	Not Available	53.06%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	53.03%
Matrix_153	AP2	Not Available	53.00%
Matrix_340	HSFC1	Not Available	52.99%
Motif_600	JASE2 motif in OPR1	JASE2found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -112 and -100; Involved in up-regulation by both senescence and JA; JASE2 contains a mixed A/C box-like motif;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	52.97%
Matrix_497	AP3	Not Available	52.90%
Matrix_331	GBF1	Not Available	52.89%
Matrix_449	BIM2	Not Available	52.89%
Matrix_71	ATHB7	Not Available	52.86%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	52.76%
Matrix_483	ICU4	Not Available	52.75%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	52.74%
Matrix_447	RVE1	Not Available	52.73%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	52.72%
Matrix_415	WRKY27	Not Available	52.63%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.59%
Matrix_479	TOE1	Not Available	52.55%
Matrix_502	AT3G13040	Not Available	52.55%
Matrix_470	WRKY18	Not Available	52.53%
Matrix_389	ILR3	Not Available	52.52%
Matrix_434	ARR11	Not Available	52.41%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	52.40%
Matrix_404	OBP4	Not Available	52.39%
Matrix_323	BIM3	Not Available	52.30%
Matrix_54	AHL20	Not Available	52.28%
Matrix_152	EIL1; AT5G65100	Not Available	52.19%
Motif_363	WRKY26	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.16%
Matrix_472	ZN_C2_H2	Not Available	52.04%
Matrix_273	ANAC55	Not Available	52.04%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.01%
Matrix_290	AP2	Not Available	51.98%
Matrix_33	SPL11; SPL10; SPL2	Not Available	51.88%
Motif_290	CCTCGTGTCTCGMGH3	Sequence found in D1 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	51.87%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	51.79%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	51.78%
Matrix_448	ATERF6	Not Available	51.73%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	51.71%
Matrix_387	ORA47	Not Available	51.70%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	51.69%
Matrix_169	E2F1	Not Available	51.63%
Matrix_125	AHL12	Not Available	51.63%
Matrix_244	DREB2C	Not Available	51.62%
Matrix_129	ABF1	Not Available	51.58%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	51.55%
Matrix_504	WRKY40	Not Available	51.55%
Matrix_518	AT2G21230	Not Available	51.51%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	51.51%
Matrix_141	AT3G25990	Not Available	51.51%
Matrix_438	AtbZIP63	Not Available	51.40%
Matrix_471	KAN4	Not Available	51.38%
Matrix_59	AT4G00238; AT4G00250	Not Available	51.37%
Matrix_402	TOE1	Not Available	51.33%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	51.21%
Matrix_341	HMGA	Not Available	51.20%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	51.10%
Matrix_230	ARR11	Not Available	51.07%
Matrix_423	AT3G04030	Not Available	51.03%
Matrix_394	DREB_U	Not Available	50.96%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.95%
Matrix_253	ETT	Not Available	50.89%
Matrix_57	WIN1; SHN3; SHN2	Not Available	50.86%
Matrix_139	OBF5	Not Available	50.85%
Matrix_26	ATMYB3; MYB24	Not Available	50.69%
Matrix_192	FHY3/FAR1	Not Available	50.67%
Matrix_88	AHL12	Not Available	50.65%
Matrix_321	HRD	Not Available	50.62%
Matrix_53	MYC3	Not Available	50.60%
Matrix_1	TOE2	Not Available	50.58%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.55%
Motif_255	B2GMAUX28	B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif	50.46%
Matrix_463	HAT3.1	Not Available	50.45%
Matrix_174	ZAT2	Not Available	50.43%
Motif_557	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	50.38%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	50.37%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	50.34%
Motif_654	DR5GMGH3	DR5; A highly active synthetic auxin response element; Created by site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter; The DR5 showed greater auxin responsiveness; Binding site of ARF1	50.25%
Matrix_288	RAP2.3	Not Available	50.20%
Matrix_385	DEAR4	Not Available	50.18%
Matrix_104	PI	Not Available	50.15%
Matrix_40	TCP2	Not Available	50.04%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	50.00%