PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_395
Name: AT1G19210; ORA47; AT4G31060; AT5G21960
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	80.37%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	77.39%
Matrix_409	DEAR3	Not Available	77.24%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	73.50%
Matrix_50	ATERF14; AT5G43410	Not Available	73.15%
Matrix_45	DRN	Not Available	72.09%
Matrix_406	ATERF-7	Not Available	71.94%
Matrix_387	ORA47	Not Available	71.56%
Matrix_484	ATERF13	Not Available	71.51%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	71.40%
Matrix_462	ATERF-8	Not Available	71.06%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	70.65%
Matrix_61	ATCBF3	Not Available	70.58%
Matrix_295	ERF1	Not Available	70.42%
Matrix_344	ATERF15; AT4G18450	Not Available	70.31%
Matrix_92	AT1G33760	Not Available	70.30%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	70.27%
Matrix_355	ERF10; ERF11	Not Available	70.18%
Matrix_478	AT1G01250	Not Available	69.83%
Matrix_147	ERF3; AT1G80580	Not Available	69.79%
Matrix_321	HRD	Not Available	69.76%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	69.54%
Matrix_360	ORA59	Not Available	69.12%
Matrix_433	ATERF1	Not Available	68.83%
Matrix_244	DREB2C	Not Available	68.35%
Matrix_277	RAP2.6	Not Available	68.32%
Matrix_394	DREB_U	Not Available	67.22%
Matrix_151	ASIL1	Not Available	67.15%
Matrix_57	WIN1; SHN3; SHN2	Not Available	67.10%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	66.33%
Matrix_385	DEAR4	Not Available	66.18%
Matrix_91	CRF3	Not Available	65.98%
Matrix_389	ILR3	Not Available	65.96%
Matrix_84	AtGRF6	Not Available	65.87%
Matrix_330	MYC2; TT8	Not Available	65.72%
Matrix_5	AT5G51190; ERF104	Not Available	65.62%
Matrix_323	BIM3	Not Available	65.54%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	65.34%
Matrix_465	MYC4	Not Available	65.08%
Matrix_448	ATERF6	Not Available	64.78%
Matrix_224	ERF1	Not Available	64.75%
Matrix_59	AT4G00238; AT4G00250	Not Available	64.73%
Matrix_288	RAP2.3	Not Available	64.64%
Matrix_363	RAP2.3	Not Available	64.50%
Matrix_449	BIM2	Not Available	64.40%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	64.34%
Matrix_374	AT5G07580; AT5G61590	Not Available	64.15%
Matrix_292	FTQ4	Not Available	64.09%
Matrix_120	BEE2	Not Available	64.00%
Matrix_446	LBD16	Not Available	63.87%
Matrix_336	AT5G08520	Not Available	63.75%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	63.61%
Matrix_517	ERF12	Not Available	63.42%
Matrix_261	ATERF-1	Not Available	63.36%
Matrix_493	AT1G22985; AT1G71130	Not Available	63.35%
Matrix_139	OBF5	Not Available	63.20%
Matrix_171	LBD3; LBD4	Not Available	62.75%
Matrix_241	HB-1; AT5G44180	Not Available	62.75%
Matrix_420	ANAC58	Not Available	62.66%
Matrix_128	TGA2	Not Available	62.55%
Matrix_142	ZFP8	Not Available	62.11%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	62.04%
Matrix_311	TGA1	Not Available	61.41%
Matrix_456	bZIP60	Not Available	61.16%
Matrix_23	ANAC46	Not Available	61.03%
Matrix_78	AT3G45610	Not Available	60.98%
Matrix_296	GBF2	Not Available	60.92%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	60.83%
Matrix_373	E2FE	Not Available	60.80%
Matrix_138	RRTF1	Not Available	60.77%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	60.52%
Matrix_196	TCP20; AT5G41030	Not Available	60.42%
Matrix_53	MYC3	Not Available	60.29%
Matrix_432	AT1G77920	Not Available	60.28%
Matrix_260	CAMTA3	Not Available	60.23%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	60.04%
Matrix_380	ATMYR1	Not Available	59.91%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	59.61%
Matrix_38	SPL14	Not Available	59.35%
Matrix_26	ATMYB3; MYB24	Not Available	59.32%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	59.31%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	59.16%
Matrix_119	RRTF1	Not Available	59.07%
Matrix_237	MYB55	Not Available	58.85%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	58.69%
Matrix_169	E2F1	Not Available	58.47%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	58.31%
Matrix_300	bZIP68; bZIP16	Not Available	58.20%
Matrix_332	SPT; ALC	Not Available	58.19%
Matrix_46	AT4G21895	Not Available	58.15%
Matrix_101	ERF5	Not Available	58.12%
Matrix_116	ANAC55	Not Available	58.02%
Matrix_152	EIL1; AT5G65100	Not Available	57.93%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	57.79%
Matrix_274	EDF3	Not Available	57.62%
Matrix_436	AT3G49930; AZF1	Not Available	57.51%
Matrix_287	ERF2	Not Available	57.14%
Matrix_234	RAP2.3	Not Available	57.09%
Matrix_259	AT1G50680; AT1G51120	Not Available	57.04%
Matrix_166	TGA4	Not Available	56.93%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	56.75%
Matrix_379	RHL41	Not Available	56.55%
Matrix_129	ABF1	Not Available	56.50%
Matrix_99	DOF4.7	Not Available	56.43%
Matrix_110	ATABI4; AT3G57600	Not Available	56.40%
Matrix_397	GT2L	Not Available	56.38%
Matrix_253	ETT	Not Available	56.37%
Matrix_141	AT3G25990	Not Available	56.35%
Matrix_423	AT3G04030	Not Available	56.31%
Matrix_503	AT2G37430; AT3G53600	Not Available	56.20%
Matrix_343	AT2G33710	Not Available	56.19%
Matrix_188	SPL4	Not Available	56.15%
Matrix_346	AtMYB70; MYB73	Not Available	56.15%
Matrix_415	WRKY27	Not Available	56.06%
Matrix_35	YAB5; YAB3	Not Available	56.02%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	55.96%
Matrix_37	GATA27	Not Available	55.96%
Matrix_135	ABI3	Not Available	55.87%
Matrix_109	GBF3	Not Available	55.87%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	55.75%
Matrix_322	NST3; ANAC015; BRN2	Not Available	55.70%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	55.62%
Matrix_198	STZ; C2H2; AZF3	Not Available	55.55%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	55.49%
Matrix_490	AtMYB77; ATMYB44	Not Available	55.45%
Matrix_308	INO	Not Available	55.39%
Matrix_378	ATERF1	Not Available	55.37%
Matrix_239	AT5G04390	Not Available	55.32%
Matrix_500	WRKY43	Not Available	55.31%
Matrix_452	MYB46	Not Available	55.28%
Matrix_27	ATAIB; ATNIG1	Not Available	55.20%
Matrix_146	ORA47	Not Available	55.17%
Matrix_272	DEAR4	Not Available	55.17%
Matrix_248	ZFP5	Not Available	55.16%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	55.16%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	55.04%
Matrix_341	HMGA	Not Available	55.02%
Matrix_243	RAP2.12; RAP2.2	Not Available	55.00%
Matrix_12	EIN3; EIL2	Not Available	54.89%
Matrix_425	TIFY2A	Not Available	54.84%
Motif_100	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	54.81%
Matrix_473	RRTF1	Not Available	54.77%
Matrix_249	WRKY11	Not Available	54.50%
Matrix_176	MYB98	Not Available	54.49%
Matrix_422	TOE1	Not Available	54.47%
Matrix_258	WOX13	Not Available	54.30%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	54.28%
Matrix_334	AT3G23230	Not Available	54.25%
Matrix_482	AT2G25650; AT4G00270	Not Available	54.20%
Motif_244	ABRE-like binding site motif	Not Available	54.04%
Motif_274	MYB1 binding site motif	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein	54.02%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	53.99%
Matrix_157	LHY; RVE2	Not Available	53.97%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	53.89%
Matrix_79	FUS3	Not Available	53.69%
Motif_478	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	53.67%
Matrix_416	ASL5	Not Available	53.55%
Matrix_187	CDC5	Not Available	53.46%
Matrix_349	CDC5	Not Available	53.46%
Matrix_1	TOE2	Not Available	53.43%
Matrix_362	DEAR3	Not Available	53.33%
Matrix_518	AT2G21230	Not Available	53.23%
Matrix_65	POC1; PIL1	Not Available	53.23%
Matrix_506	DRNL; ATERF-4	Not Available	53.20%
Matrix_410	TOE2	Not Available	53.18%
Matrix_331	GBF1	Not Available	53.11%
Matrix_221	SPL7	Not Available	53.06%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	53.02%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	52.97%
Matrix_197	NAP	Not Available	52.93%
Motif_192	BOXLCOREDCPAL	Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro	52.86%
Matrix_426	CRF1; CRF2	Not Available	52.81%
Matrix_252	RAP2.6	Not Available	52.77%
Matrix_126	RBE	Not Available	52.57%
Matrix_52	ZAT18	Not Available	52.53%
Matrix_329	WRKY12	Not Available	52.52%
Motif_607	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	52.50%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	52.46%
Matrix_271	AT3G16350	Not Available	52.39%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	52.38%
Matrix_475	AT5G64220	Not Available	52.20%
Motif_140	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	52.12%
Matrix_97	APRR2	Not Available	52.06%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.94%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	51.92%
Matrix_210	ARR1	Not Available	51.90%
Matrix_177	ADOF2	Not Available	51.90%
Matrix_472	ZN_C2_H2	Not Available	51.85%
Matrix_505	GATA8	Not Available	51.78%
Matrix_282	bZIP60	Not Available	51.75%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	51.70%
Matrix_86	CRF5; CRF6; CRF4	Not Available	51.69%
Matrix_328	AT1G76580	Not Available	51.69%
Motif_591	CBFHV	Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)	51.65%
Matrix_293	WRKY38	Not Available	51.59%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.58%
Motif_218	ABRERATCAL	ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE	51.55%
Matrix_186	FHY3	Not Available	51.54%
Matrix_100	AT1G48610	Not Available	51.52%
Matrix_70	GATA26	Not Available	51.50%
Matrix_265	NGA3	Not Available	51.41%
Matrix_193	RAV1	Not Available	51.41%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	51.41%
Matrix_4	ARR14	Not Available	51.34%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	51.33%
Matrix_113	ABI5	Not Available	51.31%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.20%
Matrix_174	ZAT2	Not Available	51.17%
Matrix_400	MYB46	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	51.15%
Motif_254	MYB46; MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	51.15%
Matrix_486	MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	51.15%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	51.13%
Motif_392	PALBOXAPC	Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L	51.06%
Matrix_20	ANAC030; NST1; NAC066	Not Available	50.82%
Matrix_463	HAT3.1	Not Available	50.73%
Matrix_333	GATA3	Not Available	50.72%
Matrix_14	ZCW32; AT5G62610	Not Available	50.71%
Matrix_307	RGL2; RGL3	Not Available	50.64%
Matrix_399	TGA1	Not Available	50.57%
Matrix_122	ABF1; AREB2	Not Available	50.52%
Matrix_87	AT1G19000	Not Available	50.46%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.43%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	50.39%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.30%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	50.25%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.21%
Matrix_402	TOE1	Not Available	50.14%
Matrix_421	GLK1	Not Available	50.13%
Motif_233	DRE1COREZMRAB17	DRE1 core found in maize rab17 gene promoter; DRE1 was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABA	50.12%
Matrix_476	bHLH115; bHLH34	Not Available	50.11%
Matrix_69	AT2G03500	Not Available	50.11%
Matrix_405	DREB2C	Not Available	50.03%
Matrix_80	BIM1	Not Available	50.00%