Matrix_2 | SEP4 | Not Available | | 100.00% |
Matrix_417 | SEP4 | Not Available | | 100.00% |
Matrix_428 | SEP4 | Not Available | | 91.56% |
Matrix_28 | SEP1 | Not Available | | 88.36% |
Matrix_222 | AGL2 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 88.36% |
Motif_180 | AGL2 binding site motif | Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer | | 84.20% |
Matrix_121 | SHP1 | Not Available | | 80.17% |
Matrix_386 | AGL1 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 80.17% |
Matrix_43 | AG | Not Available | | 78.99% |
Matrix_445 | AG | Not Available | | 78.99% |
Matrix_98 | AG | Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS | | 78.99% |
Matrix_358 | AGL15 | Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study | | 77.29% |
Motif_6 | AGL1 binding site motif | Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures | | 74.69% |
Motif_105 | AGL3 binding site motif | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 68.82% |
Matrix_485 | SVP; AGL24 | Not Available | | 67.09% |
Motif_327 | AGAMOUSATCONSENSUS | Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338 | | 66.50% |
Matrix_123 | FUSCA3 | Not Available | | 65.71% |
Matrix_18 | AP3 | Not Available | | 65.04% |
Matrix_464 | AGL15; AGL71 | Not Available | | 63.33% |
Motif_110 | AGATCONSENSUS | Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development | | 62.88% |
Matrix_267 | FLM; FLC; MAF2; FCL3; AGL69; AGL68 | Not Available | | 61.93% |
Motif_148 | CArG3 motif in AP3 | CArG3 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 61.23% |
Motif_455 | AG binding site motif | Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro | | 60.02% |
Matrix_304 | AtSPL3 | Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains | | 59.45% |
Matrix_414 | AGL15 | Not Available | | 58.27% |
Motif_686 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 58.06% |
Motif_159 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 58.06% |
Matrix_107 | AtSPL3 | Not Available | | 58.04% |
Matrix_214 | AP1 | Not Available | | 57.98% |
Motif_289 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 57.92% |
Motif_527 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 57.92% |
Matrix_213 | ATHB22 | Not Available | | 57.47% |
Matrix_338 | AP2 | Not Available | | 57.27% |
Matrix_375 | AtSPL8 | Not Available | | 56.83% |
Matrix_345 | POC1 | Not Available | | 56.73% |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | | 56.73% |
Matrix_194 | HYH; HY5 | Not Available | | 56.20% |
Matrix_356 | PRR5 | Not Available | | 56.13% |
Motif_111 | CArG1 motif in AP3 | CArG1 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 55.87% |
Matrix_466 | PRR5 | Not Available | | 55.52% |
Matrix_191 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 55.18% |
Motif_504 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 55.10% |
Motif_635 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 55.10% |
Matrix_359 | FLC | Not Available | | 55.07% |
Matrix_403 | BZR1 | Not Available | | 54.45% |
Matrix_149 | PI | Not Available | | 54.39% |
Matrix_443 | AGL15 | Not Available | | 54.38% |
Matrix_30 | AtSPL8 | Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains | | 54.30% |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 54.19% |
Motif_346 | SND1; VND6; VND7; NST1; NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | | 53.66% |
Matrix_381 | ATHB9 | Not Available | | 53.07% |
Matrix_468 | ATHB9 | The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins | | 53.07% |
Matrix_459 | ATHB9; CNA; PHB; ATHB-8; REV | Not Available | | 53.07% |
Matrix_499 | ARR18 | Not Available | | 52.31% |
Matrix_39 | AP1 | Not Available | | 52.01% |
Matrix_353 | HAT5 | Not Available | | 51.94% |
Matrix_497 | AP3 | Not Available | | 51.60% |
Matrix_184 | AGL15 | Not Available | | 51.59% |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 51.49% |
Motif_156 | HBOXPVCHS15 | Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1 is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76 kDa and 56 kDa; Elicitation of bean cell with glutathione causes a rapid increase in specific activities of KAP-1 and KAP2 | | 51.37% |
Matrix_498 | AT2G28710; AT3G46070; AT3G46080; ZAT7 | Not Available | | 51.28% |
Matrix_342 | SPL14 | Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance | | 51.09% |
Matrix_77 | PRR5 | Not Available | | 50.95% |
Motif_185 | CArG2 motif in AP3 | CArG2 found in the Arabidopsis APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 50.87% |
Matrix_467 | RAV1 | Not Available | | 50.81% |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 50.81% |
Matrix_477 | RAV1 | Not Available | | 50.81% |
Matrix_105 | SPL14 | Not Available | | 50.64% |
Motif_494 | TOPOISOM | Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | | 50.60% |
Matrix_24 | POC1 | Not Available | | 50.49% |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | | 50.49% |
Motif_691 | HBOXCONSENSUSPVCHS | H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen | | 50.33% |
Matrix_55 | PIF3 | Not Available | | 50.17% |
Motif_47 | CARGNCAT | Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo | | 50.16% |
Matrix_36 | RAV1_1 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 50.13% |
Motif_152 | MEJARELELOX | MeJa-responsive element (MeJaRE) in tomato lipoxygenase (LOX) gene; Related to tomato lipoxygenase gene expression during development and for MeJa (methyl jasmonate)-responsiveness | | 50.11% |
Matrix_49 | FHY3/FAR1 | Not Available | | 50.07% |