PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_294
Name: MEE35
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_82	TCP17	Not Available	95.39%
Matrix_94	TCP5	Not Available	92.34%
Matrix_281	TCP13	Not Available	91.96%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	70.40%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	66.50%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	66.46%
Motif_459	SORLIP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	64.38%
Matrix_216	TCP16	Not Available	64.12%
Matrix_297	TCP15	Not Available	62.92%
Matrix_130	TCP16	Not Available	62.89%
Motif_545	SORLIP1AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; SORLIP 1 is most over-represented, and most statistically singnificant; Over-represented in light-induced cotyledon and root common genes and root-specific genes	62.35%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	62.12%
Matrix_232	TCP23	Not Available	62.12%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	62.06%
Matrix_507	TCP3	Not Available	61.51%
Matrix_289	WRKY25	Not Available	60.25%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	60.23%
Motif_622	SORLIP2AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	59.97%
Matrix_245	WRKY62; WRKY38	Not Available	59.82%
Matrix_42	AT2G45680	Not Available	59.66%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	59.63%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	58.84%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	57.88%
Motif_413	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	57.88%
Matrix_348	AT5G51910	Not Available	57.08%
Matrix_165	KNAT1	Not Available	55.58%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	54.40%
Matrix_504	WRKY40	Not Available	54.27%
Motif_452	MYB4 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	54.08%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	53.93%
Motif_163	BOXCPSAS1	Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1	53.23%
Matrix_482	AT2G25650; AT4G00270	Not Available	53.16%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	52.90%
Motif_543	TATCCACHVAL21	TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response	52.85%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	52.84%
Matrix_196	TCP20; AT5G41030	Not Available	52.62%
Motif_618	MYB1AT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis	51.95%
Matrix_137	SPL1; SPL12	Not Available	51.79%
Matrix_40	TCP2	Not Available	51.72%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	51.33%
Matrix_362	DEAR3	Not Available	51.09%
Matrix_390	GT-1	Not Available	51.04%
Motif_525	CRTDREHVCBF2	Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature	50.82%
Matrix_334	AT3G23230	Not Available	50.57%
Matrix_86	CRF5; CRF6; CRF4	Not Available	50.26%