Matrix_363 | RAP2.3 | Not Available | | 89.16% |
Matrix_138 | RRTF1 | Not Available | | 88.01% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 86.09% |
Matrix_119 | RRTF1 | Not Available | | 84.67% |
Matrix_224 | ERF1 | Not Available | | 82.80% |
Matrix_409 | DEAR3 | Not Available | | 81.88% |
Matrix_355 | ERF10; ERF11 | Not Available | | 80.68% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 80.26% |
Matrix_277 | RAP2.6 | Not Available | | 78.63% |
Matrix_448 | ATERF6 | Not Available | | 78.19% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 76.96% |
Matrix_433 | ATERF1 | Not Available | | 76.11% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 76.03% |
Matrix_244 | DREB2C | Not Available | | 75.44% |
Matrix_261 | ATERF-1 | Not Available | | 74.06% |
Matrix_91 | CRF3 | Not Available | | 73.82% |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 73.52% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 72.64% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 72.09% |
Matrix_61 | ATCBF3 | Not Available | | 71.96% |
Matrix_394 | DREB_U | Not Available | | 71.91% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 71.61% |
Matrix_385 | DEAR4 | Not Available | | 71.37% |
Matrix_92 | AT1G33760 | Not Available | | 71.24% |
Matrix_146 | ORA47 | Not Available | | 71.22% |
Matrix_295 | ERF1 | Not Available | | 70.97% |
Matrix_45 | DRN | Not Available | | 70.74% |
Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 70.34% |
Matrix_484 | ATERF13 | Not Available | | 70.25% |
Matrix_378 | ATERF1 | Not Available | | 70.06% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 69.43% |
Matrix_360 | ORA59 | Not Available | | 69.14% |
Matrix_426 | CRF1; CRF2 | Not Available | | 69.07% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 68.97% |
Matrix_234 | RAP2.3 | Not Available | | 68.84% |
Matrix_473 | RRTF1 | Not Available | | 68.38% |
Matrix_343 | AT2G33710 | Not Available | | 68.35% |
Matrix_462 | ATERF-8 | Not Available | | 68.23% |
Matrix_321 | HRD | Not Available | | 68.20% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 68.18% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 67.73% |
Matrix_272 | DEAR4 | Not Available | | 67.18% |
Matrix_252 | RAP2.6 | Not Available | | 66.77% |
Matrix_456 | bZIP60 | Not Available | | 65.57% |
Matrix_169 | E2F1 | Not Available | | 65.43% |
Matrix_190 | ATERF1 | Not Available | | 65.27% |
Matrix_406 | ATERF-7 | Not Available | | 65.17% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 64.97% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 64.90% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 64.76% |
Matrix_151 | ASIL1 | Not Available | | 64.51% |
Matrix_517 | ERF12 | Not Available | | 64.28% |
Matrix_387 | ORA47 | Not Available | | 64.17% |
Motif_219 | E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 64.12% |
Motif_509 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 64.06% |
Matrix_282 | bZIP60 | Not Available | | 63.84% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 63.79% |
Motif_144 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 63.43% |
Matrix_334 | AT3G23230 | Not Available | | 63.32% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 63.13% |
Matrix_253 | ETT | Not Available | | 63.12% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 62.97% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 62.79% |
Matrix_420 | ANAC58 | Not Available | | 62.68% |
Matrix_23 | ANAC46 | Not Available | | 62.03% |
Matrix_171 | LBD3; LBD4 | Not Available | | 61.83% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 61.80% |
Matrix_40 | TCP2 | Not Available | | 61.80% |
Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.77% |
Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.59% |
Matrix_228 | TGA2 | Not Available | | 61.38% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 60.80% |
Matrix_287 | ERF2 | Not Available | | 60.67% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 60.43% |
Matrix_260 | CAMTA3 | Not Available | | 60.18% |
Matrix_393 | REM1 | Not Available | | 59.92% |
Matrix_373 | E2FE | Not Available | | 59.05% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 58.72% |
Matrix_348 | AT5G51910 | Not Available | | 58.67% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 58.49% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 58.35% |
Matrix_101 | ERF5 | Not Available | | 58.29% |
Matrix_293 | WRKY38 | Not Available | | 58.21% |
Matrix_130 | TCP16 | Not Available | | 57.91% |
Matrix_500 | WRKY43 | Not Available | | 57.70% |
Matrix_292 | FTQ4 | Not Available | | 57.63% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 57.56% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 57.53% |
Matrix_329 | WRKY12 | Not Available | | 57.49% |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 57.35% |
Matrix_478 | AT1G01250 | Not Available | | 57.34% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 57.20% |
Matrix_193 | RAV1 | Not Available | | 57.18% |
Matrix_265 | NGA3 | Not Available | | 57.18% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 57.13% |
Matrix_42 | AT2G45680 | Not Available | | 57.06% |
Matrix_492 | ETT | Not Available | | 56.93% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 56.91% |
Motif_99 | DREB1A; DREB1C; DREB1B | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit | | 56.85% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 56.53% |
Matrix_230 | ARR11 | Not Available | | 56.20% |
Matrix_249 | WRKY11 | Not Available | | 56.12% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 56.08% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 55.90% |
Matrix_70 | GATA26 | Not Available | | 55.90% |
Matrix_502 | AT3G13040 | Not Available | | 55.76% |
Matrix_446 | LBD16 | Not Available | | 55.61% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 55.59% |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | | 55.59% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 55.44% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 55.36% |
Matrix_450 | SPL7 | Not Available | | 55.25% |
Matrix_376 | WRKY45 | Not Available | | 55.22% |
Motif_385 | GGTCCCATGMSAUR | Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 55.12% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 54.97% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 54.83% |
Matrix_350 | ARR14 | Not Available | | 54.49% |
Matrix_139 | OBF5 | Not Available | | 54.36% |
Motif_393 | AUXREPSIAA4 | AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems | | 54.36% |
Motif_620 | DREB1&2 BS in rd29a | Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor | | 54.34% |
Matrix_475 | AT5G64220 | Not Available | | 54.32% |
Motif_203 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 54.26% |
Motif_32 | DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 54.22% |
Motif_394 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 54.22% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 54.19% |
Matrix_463 | HAT3.1 | Not Available | | 54.16% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 54.12% |
Matrix_296 | GBF2 | Not Available | | 53.97% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 53.89% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 53.89% |
Matrix_141 | AT3G25990 | Not Available | | 53.82% |
Matrix_97 | APRR2 | Not Available | | 53.63% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 53.55% |
Matrix_297 | TCP15 | Not Available | | 53.55% |
Matrix_281 | TCP13 | Not Available | | 53.44% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 53.44% |
Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 53.39% |
Matrix_52 | ZAT18 | Not Available | | 53.38% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 53.36% |
Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 53.29% |
Matrix_415 | WRKY27 | Not Available | | 53.22% |
Matrix_79 | FUS3 | Not Available | | 53.15% |
Matrix_308 | INO | Not Available | | 53.15% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 53.13% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 53.10% |
Matrix_362 | DEAR3 | Not Available | | 53.03% |
Matrix_505 | GATA8 | Not Available | | 52.99% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 52.93% |
Motif_621 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 52.90% |
Matrix_328 | AT1G76580 | Not Available | | 52.79% |
Matrix_389 | ILR3 | Not Available | | 52.77% |
Matrix_258 | WOX13 | Not Available | | 52.72% |
Matrix_271 | AT3G16350 | Not Available | | 52.71% |
Matrix_37 | GATA27 | Not Available | | 52.61% |
Motif_97 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 52.54% |
Matrix_232 | TCP23 | Not Available | | 52.53% |
Matrix_286 | GATA7 | Not Available | | 52.46% |
Matrix_84 | AtGRF6 | Not Available | | 52.45% |
Motif_435 | E2FBNTRNR | E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation | | 52.34% |
Matrix_416 | ASL5 | Not Available | | 52.28% |
Matrix_504 | WRKY40 | Not Available | | 52.17% |
Matrix_197 | NAP | Not Available | | 52.13% |
Matrix_481 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 52.10% |
Matrix_273 | ANAC55 | Not Available | | 51.99% |
Matrix_135 | ABI3 | Not Available | | 51.92% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 51.79% |
Matrix_405 | DREB2C | Not Available | | 51.78% |
Motif_405 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 51.76% |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | | 51.68% |
Matrix_6 | AT1G70000 | Not Available | | 51.66% |
Matrix_452 | MYB46 | Not Available | | 51.63% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 51.52% |
Matrix_430 | TOE2 | Not Available | | 51.48% |
Matrix_106 | AT5G47390 | Not Available | | 51.22% |
Matrix_80 | BIM1 | Not Available | | 51.20% |
Matrix_226 | GATA1 | Not Available | | 51.03% |
Motif_636 | AMMORESVDCRNIA1 | Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation | | 50.98% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 50.95% |
Matrix_507 | TCP3 | Not Available | | 50.90% |
Matrix_294 | MEE35 | Not Available | | 50.83% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 50.82% |
Motif_265 | GCAACREPEATZMZEIN | GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb | | 50.68% |
Matrix_237 | MYB55 | Not Available | | 50.63% |
Matrix_116 | ANAC55 | Not Available | | 50.60% |
Matrix_518 | AT2G21230 | Not Available | | 50.59% |
Matrix_120 | BEE2 | Not Available | | 50.48% |
Matrix_170 | AT5G47660 | Not Available | | 50.46% |
Matrix_187 | CDC5 | Not Available | | 50.43% |
Matrix_349 | CDC5 | Not Available | | 50.43% |
Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 50.43% |
Matrix_173 | ZAP1 | Not Available | | 50.37% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 50.24% |
Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | | 50.13% |
Matrix_447 | RVE1 | Not Available | | 50.11% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 50.07% |
Matrix_46 | AT4G21895 | Not Available | | 50.05% |
Matrix_69 | AT2G03500 | Not Available | | 50.01% |
Matrix_479 | TOE1 | Not Available | | 50.00% |