PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_28
Name: SEP1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	100.00%
Matrix_428	SEP4	Not Available	90.60%
Matrix_417	SEP4	Not Available	88.36%
Matrix_2	SEP4	Not Available	88.36%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	88.36%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	85.37%
Matrix_121	SHP1	Not Available	83.57%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	83.57%
Matrix_43	AG	Not Available	83.49%
Matrix_445	AG	Not Available	83.49%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	83.49%
Motif_6	AGL1 binding site motif	Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures	78.31%
Matrix_358	AGL15	Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study	77.42%
Motif_105	AGL3 binding site motif	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	71.73%
Matrix_485	SVP; AGL24	Not Available	71.18%
Motif_327	AGAMOUSATCONSENSUS	Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338	70.01%
Matrix_18	AP3	Not Available	69.04%
Matrix_464	AGL15; AGL71	Not Available	67.44%
Matrix_123	FUSCA3	Not Available	65.68%
Matrix_267	FLM; FLC; MAF2; FCL3; AGL69; AGL68	Not Available	64.98%
Motif_110	AGATCONSENSUS	Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development	63.77%
Motif_455	AG binding site motif	Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro	61.59%
Motif_148	CArG3 motif in AP3	CArG3 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	60.51%
Matrix_149	PI	Not Available	58.89%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	58.87%
Motif_111	CArG1 motif in AP3	CArG1 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	58.70%
Matrix_338	AP2	Not Available	58.53%
Matrix_214	AP1	Not Available	58.46%
Matrix_194	HYH; HY5	Not Available	58.07%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	58.00%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	58.00%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	57.63%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	57.63%
Matrix_466	PRR5	Not Available	57.41%
Matrix_107	AtSPL3	Not Available	57.41%
Matrix_345	POC1	Not Available	56.79%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	56.79%
Matrix_414	AGL15	Not Available	56.59%
Matrix_375	AtSPL8	Not Available	56.32%
Matrix_356	PRR5	Not Available	55.99%
Matrix_213	ATHB22	Not Available	55.60%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	55.10%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	55.06%
Matrix_443	AGL15	Not Available	54.46%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	54.40%
Matrix_30	AtSPL8	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	54.34%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	54.24%
Matrix_359	FLC	Not Available	54.17%
Matrix_403	BZR1	Not Available	52.90%
Matrix_184	AGL15	Not Available	52.65%
Motif_346	SND1; VND6; VND7; NST1; NST2	Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis	52.38%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.83%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.72%
Matrix_49	FHY3/FAR1	Not Available	51.68%
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	51.68%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	51.64%
Matrix_353	HAT5	Not Available	51.38%
Matrix_497	AP3	Not Available	51.30%
Motif_387	AG BS in SPL/NOZ	The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS	51.25%
Matrix_467	RAV1	Not Available	51.20%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	51.20%
Matrix_477	RAV1	Not Available	51.20%
Motif_185	CArG2 motif in AP3	CArG2 found in the Arabidopsis APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	51.19%
Matrix_499	ARR18	Not Available	50.97%
Motif_152	MEJARELELOX	MeJa-responsive element (MeJaRE) in tomato lipoxygenase (LOX) gene; Related to tomato lipoxygenase gene expression during development and for MeJa (methyl jasmonate)-responsiveness	50.94%
Matrix_342	SPL14	Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance	50.87%
Motif_691	HBOXCONSENSUSPVCHS	H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen	50.78%
Matrix_77	PRR5	Not Available	50.71%
Matrix_153	AP2	Not Available	50.50%
Motif_156	HBOXPVCHS15	Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1 is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76 kDa and 56 kDa; Elicitation of bean cell with glutathione causes a rapid increase in specific activities of KAP-1 and KAP2	50.50%
Matrix_39	AP1	Not Available	50.39%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	50.18%
Motif_75	TEFBOXATEEF1AA1	tef-box found in the Arabidopsis eEF1AA1 gene promoter; An activating sequence associated with telo-box; Required for the gene expression in root primordia; Acts co-operatively with telo-box; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems	50.17%