Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 70.19% |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | | 69.40% |
Matrix_387 | ORA47 | Not Available | | 68.59% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 68.24% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 67.21% |
Motif_58 | LREBOXIPCCHS1 | BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat | | 65.68% |
Motif_140 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 65.58% |
Matrix_451 | STY1 | Not Available | | 64.56% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 63.97% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 62.96% |
Matrix_328 | AT1G76580 | Not Available | | 61.96% |
Matrix_410 | TOE2 | Not Available | | 61.84% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 61.73% |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | | 61.56% |
Matrix_478 | AT1G01250 | Not Available | | 61.40% |
Matrix_336 | AT5G08520 | Not Available | | 61.34% |
Motif_101 | MYB61 | AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network | | 60.89% |
Matrix_38 | SPL14 | Not Available | | 60.80% |
Motif_100 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 60.69% |
Motif_620 | DREB1&2 BS in rd29a | Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor | | 60.41% |
Motif_254 | MYB46; MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 60.35% |
Matrix_486 | MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 60.35% |
Matrix_400 | MYB46 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 60.35% |
Matrix_92 | AT1G33760 | Not Available | | 60.28% |
Motif_461 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 60.16% |
Motif_419 | MYB4 binding site motif | Not Available | | 59.90% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 59.75% |
Matrix_258 | WOX13 | Not Available | | 59.65% |
Motif_478 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 59.36% |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | | 59.32% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 59.27% |
Matrix_157 | LHY; RVE2 | Not Available | | 59.17% |
Motif_607 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 59.08% |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | | 58.82% |
Matrix_180 | SPL1 | Not Available | | 58.59% |
Motif_426 | MYB58; MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | | 58.54% |
Motif_564 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 58.22% |
Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 58.14% |
Matrix_9 | AT5G04760 | Not Available | | 58.05% |
Matrix_99 | DOF4.7 | Not Available | | 57.81% |
Matrix_254 | MYB52 | Not Available | | 57.79% |
Matrix_394 | DREB_U | Not Available | | 57.72% |
Matrix_452 | MYB46 | Not Available | | 57.47% |
Matrix_210 | ARR1 | Not Available | | 57.40% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 57.27% |
Matrix_406 | ATERF-7 | Not Available | | 57.16% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 57.03% |
Matrix_4 | ARR14 | Not Available | | 56.98% |
Matrix_53 | MYC3 | Not Available | | 56.97% |
Matrix_462 | ATERF-8 | Not Available | | 56.86% |
Matrix_518 | AT2G21230 | Not Available | | 56.65% |
Matrix_85 | SPL5 | Not Available | | 56.64% |
Matrix_402 | TOE1 | Not Available | | 56.61% |
Motif_331 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 56.53% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 56.50% |
Matrix_224 | ERF1 | Not Available | | 56.06% |
Motif_288 | NONAMERMOTIFTAH3H4 | Nonamer motif found in promoter of wheat histone genes H3 and H4 | | 55.85% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 55.75% |
Matrix_416 | ASL5 | Not Available | | 55.71% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 55.57% |
Matrix_435 | ATHB51 | Not Available | | 55.54% |
Matrix_385 | DEAR4 | Not Available | | 55.35% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 55.33% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 55.27% |
Matrix_106 | AT5G47390 | Not Available | | 55.16% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 55.16% |
Matrix_160 | RVE1 | Not Available | | 55.09% |
Motif_590 | MYB3 binding site motif | Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses | | 55.09% |
Matrix_61 | ATCBF3 | Not Available | | 55.05% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 54.89% |
Matrix_97 | APRR2 | Not Available | | 54.86% |
Matrix_409 | DEAR3 | Not Available | | 54.84% |
Motif_4 | NAP | An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves | | 54.70% |
Matrix_177 | ADOF2 | Not Available | | 54.69% |
Matrix_80 | BIM1 | Not Available | | 54.63% |
Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 54.46% |
Matrix_236 | CCA1 | Not Available | | 54.28% |
Matrix_271 | AT3G16350 | Not Available | | 54.06% |
Matrix_244 | DREB2C | Not Available | | 54.00% |
Matrix_69 | AT2G03500 | Not Available | | 53.87% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 53.81% |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | | 53.79% |
Matrix_383 | CCA1 | Not Available | | 53.77% |
Matrix_333 | GATA3 | Not Available | | 53.75% |
Matrix_182 | ATHB6 | Not Available | | 53.72% |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | | 53.69% |
Matrix_484 | ATERF13 | Not Available | | 53.42% |
Matrix_78 | AT3G45610 | Not Available | | 53.37% |
Matrix_411 | DOF5.6 | Not Available | | 53.28% |
Matrix_79 | FUS3 | Not Available | | 53.10% |
Matrix_457 | TGA2 | Not Available | | 53.10% |
Matrix_137 | SPL1; SPL12 | Not Available | | 52.95% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 52.83% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 52.76% |
Matrix_249 | WRKY11 | Not Available | | 52.69% |
Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 52.68% |
Matrix_162 | AtPHR1 | Not Available | | 52.60% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 52.46% |
Matrix_139 | OBF5 | Not Available | | 52.46% |
Matrix_487 | AT1G29160 | Not Available | | 52.42% |
Matrix_230 | ARR11 | Not Available | | 52.38% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 52.34% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 52.29% |
Matrix_6 | AT1G70000 | Not Available | | 52.21% |
Motif_233 | DRE1COREZMRAB17 | DRE1 core found in maize rab17 gene promoter; DRE1 was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABA | | 52.18% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 51.98% |
Motif_579 | WRECSAA01 | Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts | | 51.96% |
Matrix_446 | LBD16 | Not Available | | 51.94% |
Matrix_355 | ERF10; ERF11 | Not Available | | 51.86% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 51.82% |
Matrix_84 | AtGRF6 | Not Available | | 51.78% |
Matrix_361 | AT1G25550 | Not Available | | 51.72% |
Matrix_357 | WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72 | Not Available | | 51.65% |
Matrix_295 | ERF1 | Not Available | | 51.64% |
Matrix_109 | GBF3 | Not Available | | 51.62% |
Matrix_17 | WRKY22 | Not Available | | 51.58% |
Matrix_161 | MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570 | Not Available | | 51.54% |
Matrix_8 | KAN1 | Not Available | | 51.54% |
Matrix_308 | INO | Not Available | | 51.51% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 51.50% |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 51.44% |
Matrix_360 | ORA59 | Not Available | | 51.42% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 51.37% |
Motif_167 | SBP-box promoter motif | Molecular characterisation of the Arabidopsis SBP-box genes | | 51.35% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 51.34% |
Matrix_32 | AHL25 | Not Available | | 51.34% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 51.24% |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | | 51.19% |
Matrix_286 | GATA7 | Not Available | | 51.09% |
Matrix_23 | ANAC46 | Not Available | | 51.05% |
Motif_540 | CCA1 motif1 BS in CAB1 | A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 51.05% |
Motif_568 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 51.05% |
Matrix_324 | AT2G01060 | Not Available | | 51.05% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 50.97% |
Matrix_171 | LBD3; LBD4 | Not Available | | 50.88% |
Matrix_142 | ZFP8 | Not Available | | 50.85% |
Motif_188 | CDA1ATCAB2 | CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis | | 50.84% |
Matrix_292 | FTQ4 | Not Available | | 50.83% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 50.81% |
Matrix_350 | ARR14 | Not Available | | 50.79% |
Matrix_311 | TGA1 | Not Available | | 50.74% |
Matrix_45 | DRN | Not Available | | 50.70% |
Matrix_288 | RAP2.3 | Not Available | | 50.63% |
Motif_477 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.62% |
Matrix_156 | POC1 | Not Available | | 50.62% |
Matrix_500 | WRKY43 | Not Available | | 50.60% |
Matrix_70 | GATA26 | Not Available | | 50.59% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 50.55% |
Matrix_489 | RAV1 | Not Available | | 50.52% |
Matrix_176 | MYB98 | Not Available | | 50.50% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 50.47% |
Matrix_461 | ATHB12 | Not Available | | 50.44% |
Motif_32 | DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 50.41% |
Matrix_54 | AHL20 | Not Available | | 50.39% |
Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 50.28% |
Matrix_331 | GBF1 | Not Available | | 50.26% |
Matrix_277 | RAP2.6 | Not Available | | 50.23% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 50.21% |
Matrix_421 | GLK1 | Not Available | | 50.14% |
Matrix_505 | GATA8 | Not Available | | 50.13% |
Matrix_175 | Dof5.7 | Not Available | | 50.03% |