PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_18
Name: AP3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_464	AGL15; AGL71	Not Available	92.43%
Matrix_149	PI	Not Available	71.26%
Matrix_358	AGL15	Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study	70.46%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	67.39%
Motif_327	AGAMOUSATCONSENSUS	Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338	67.25%
Motif_105	AGL3 binding site motif	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	66.08%
Matrix_136	SEP3	Not Available	65.34%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	65.26%
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	63.09%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	62.85%
Matrix_28	SEP1	Not Available	62.85%
Matrix_132	SOC1	Not Available	61.75%
Motif_110	AGATCONSENSUS	Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development	59.72%
Matrix_497	AP3	Not Available	59.18%
Matrix_43	AG	Not Available	58.82%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	58.82%
Matrix_445	AG	Not Available	58.82%
Matrix_214	AP1	Not Available	58.67%
Matrix_184	AGL15	Not Available	58.06%
Matrix_417	SEP4	Not Available	58.05%
Matrix_2	SEP4	Not Available	58.05%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	58.05%
Matrix_428	SEP4	Not Available	57.68%
Matrix_485	SVP; AGL24	Not Available	57.41%
Matrix_353	HAT5	Not Available	57.16%
Matrix_121	SHP1	Not Available	56.98%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	56.98%
Matrix_74	LFY	Not Available	56.02%
Motif_455	AG binding site motif	Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro	55.98%
Matrix_443	AGL15	Not Available	55.41%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	55.16%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	54.86%
Motif_6	AGL1 binding site motif	Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures	54.68%
Matrix_153	AP2	Not Available	54.48%
Matrix_55	PIF3	Not Available	54.39%
Matrix_77	PRR5	Not Available	54.32%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	54.32%
Matrix_407	AP1	Not Available	54.05%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	54.02%
Matrix_213	ATHB22	Not Available	53.58%
Motif_387	AG BS in SPL/NOZ	The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS	53.02%
Matrix_499	ARR18	Not Available	52.79%
Matrix_440	LFY	Not Available	52.12%
Matrix_338	AP2	Not Available	51.85%
Matrix_403	BZR1	Not Available	51.74%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	51.20%
Matrix_72	CDF2	Not Available	51.14%
Matrix_359	FLC	Not Available	50.86%
Matrix_364	FLC	Not Available	50.72%
Matrix_104	PI	Not Available	50.66%
Matrix_181	Dof5.7	Not Available	50.56%
Matrix_267	FLM; FLC; MAF2; FCL3; AGL69; AGL68	Not Available	50.40%
Matrix_227	AT1G64620	Not Available	50.25%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	50.24%
Motif_267	WBOXGACAD1A	W-box found in the promoter region of the CAD1-A (cotton (+) delta-cadinene synthase-A) gene (located in the region -340 to -327) of cotton;Binding site of GaWRKY1; GaWRKY1 regulates sesquiterpene biosynthesis in cotton	50.08%