PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_108
Name: PIF4
Description: Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_153	AP2	Not Available	91.71%
Matrix_55	PIF3	Not Available	90.95%
Matrix_104	PI	Not Available	83.63%
Matrix_156	POC1	Not Available	76.44%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	76.37%
Matrix_480	BES1	Not Available	75.20%
Matrix_449	BIM2	Not Available	75.17%
Matrix_77	PRR5	Not Available	74.81%
Matrix_369	AT2G18300	Not Available	73.86%
Matrix_323	BIM3	Not Available	73.86%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	73.69%
Matrix_330	MYC2; TT8	Not Available	73.21%
Matrix_465	MYC4	Not Available	72.97%
Matrix_120	BEE2	Not Available	72.77%
Matrix_122	ABF1; AREB2	Not Available	72.58%
Matrix_403	BZR1	Not Available	70.32%
Matrix_389	ILR3	Not Available	70.29%
Matrix_214	AP1	Not Available	70.15%
Matrix_443	AGL15	Not Available	69.98%
Matrix_331	GBF1	Not Available	69.43%
Matrix_80	BIM1	Not Available	68.99%
Matrix_109	GBF3	Not Available	68.44%
Matrix_113	ABI5	Not Available	68.34%
Matrix_247	PIF3	Not Available	68.17%
Matrix_129	ABF1	Not Available	67.95%
Matrix_440	LFY	Not Available	67.94%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	67.83%
Matrix_438	AtbZIP63	Not Available	66.93%
Matrix_359	FLC	Not Available	66.56%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	65.86%
Matrix_278	AtbZIP44	Not Available	65.69%
Matrix_211	MYB3	Not Available	65.07%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	64.88%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	64.66%
Matrix_477	RAV1	Not Available	64.62%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	64.62%
Matrix_467	RAV1	Not Available	64.62%
Matrix_14	ZCW32; AT5G62610	Not Available	64.57%
Matrix_332	SPT; ALC	Not Available	64.37%
Matrix_339	bHLH104	Not Available	64.35%
Matrix_352	LEC2	Not Available	64.01%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	63.93%
Matrix_151	ASIL1	Not Available	63.62%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	63.61%
Matrix_273	ANAC55	Not Available	63.57%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	63.43%
Matrix_116	ANAC55	Not Available	63.36%
Matrix_448	ATERF6	Not Available	63.04%
Matrix_264	ATAREB1	Not Available	62.93%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	62.79%
Matrix_171	LBD3; LBD4	Not Available	62.73%
Matrix_59	AT4G00238; AT4G00250	Not Available	62.72%
Matrix_265	NGA3	Not Available	62.62%
Matrix_193	RAV1	Not Available	62.62%
Matrix_420	ANAC58	Not Available	62.58%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	62.51%
Matrix_186	FHY3	Not Available	62.49%
Matrix_433	ATERF1	Not Available	62.35%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	62.19%
Matrix_456	bZIP60	Not Available	62.06%
Matrix_355	ERF10; ERF11	Not Available	61.98%
Matrix_311	TGA1	Not Available	61.90%
Matrix_322	NST3; ANAC015; BRN2	Not Available	61.74%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	61.71%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	61.69%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	61.66%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	61.54%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	61.31%
Matrix_128	TGA2	Not Available	61.29%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	61.24%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	61.10%
Matrix_259	AT1G50680; AT1G51120	Not Available	61.07%
Matrix_226	GATA1	Not Available	61.07%
Matrix_300	bZIP68; bZIP16	Not Available	61.07%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	60.95%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	60.87%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	60.86%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	60.83%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	60.81%
Matrix_7	PIF4	Not Available	60.73%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	60.72%
Matrix_260	CAMTA3	Not Available	60.69%
Matrix_166	TGA4	Not Available	60.49%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	60.27%
Matrix_141	AT3G25990	Not Available	60.23%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	60.22%
Matrix_296	GBF2	Not Available	60.09%
Matrix_60	AT1G01260; AT5G57150	Not Available	60.00%
Matrix_192	FHY3/FAR1	Not Available	59.97%
Matrix_135	ABI3	Not Available	59.83%
Matrix_321	HRD	Not Available	59.78%
Matrix_446	LBD16	Not Available	59.70%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	59.63%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	59.60%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	59.43%
Matrix_150	UNE10; PIF7	Not Available	59.41%
Matrix_70	GATA26	Not Available	59.41%
Matrix_50	ATERF14; AT5G43410	Not Available	59.39%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	59.39%
Matrix_298	RAV1	Not Available	59.39%
Matrix_413	RAV1	Not Available	59.39%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	59.39%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	59.36%
Matrix_406	ATERF-7	Not Available	59.35%
Matrix_432	AT1G77920	Not Available	59.11%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	59.09%
Matrix_227	AT1G64620	Not Available	59.01%
Matrix_20	ANAC030; NST1; NAC066	Not Available	58.99%
Matrix_143	GATA14; GATA6; GATA5	Not Available	58.81%
Matrix_493	AT1G22985; AT1G71130	Not Available	58.75%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	58.68%
Matrix_169	E2F1	Not Available	58.67%
Matrix_233	MYC3	Not Available	58.59%
Matrix_502	AT3G13040	Not Available	58.55%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	58.50%
Matrix_320	MYC4	Not Available	58.46%
Matrix_37	GATA27	Not Available	58.42%
Matrix_282	bZIP60	Not Available	58.37%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	58.34%
Matrix_195	GATA2; GATA4	Not Available	58.22%
Matrix_418	KNAT6; KNAT2	Not Available	58.19%
Matrix_463	HAT3.1	Not Available	58.14%
Matrix_333	GATA3	Not Available	58.12%
Matrix_286	GATA7	Not Available	57.99%
Matrix_134	ABF1	Not Available	57.97%
Matrix_277	RAP2.6	Not Available	57.86%
Matrix_462	ATERF-8	Not Available	57.86%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	57.85%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	57.83%
Matrix_228	TGA2	Not Available	57.83%
Matrix_206	CUC1; ANAC100	Not Available	57.74%
Matrix_308	INO	Not Available	57.74%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	57.72%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	57.62%
Matrix_23	ANAC46	Not Available	57.46%
Matrix_397	GT2L	Not Available	57.38%
Matrix_145	GBF4; AT5G44080	Not Available	57.27%
Matrix_79	FUS3	Not Available	57.25%
Matrix_492	ETT	Not Available	57.20%
Matrix_91	CRF3	Not Available	57.19%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	57.15%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	57.03%
Matrix_204	WOX13	Not Available	57.03%
Matrix_97	APRR2	Not Available	56.98%
Matrix_499	ARR18	Not Available	56.96%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	56.92%
Matrix_437	MYC2	Not Available	56.91%
Matrix_497	AP3	Not Available	56.78%
Matrix_41	anac058	Not Available	56.70%
Matrix_176	MYB98	Not Available	56.69%
Matrix_203	GATA9; GATA12	Not Available	56.64%
Matrix_258	WOX13	Not Available	56.64%
Matrix_1	TOE2	Not Available	56.63%
Matrix_409	DEAR3	Not Available	56.57%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	56.56%
Matrix_472	ZN_C2_H2	Not Available	56.53%
Matrix_374	AT5G07580; AT5G61590	Not Available	56.50%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	56.41%
Matrix_188	SPL4	Not Available	56.35%
Matrix_57	WIN1; SHN3; SHN2	Not Available	56.19%
Matrix_287	ERF2	Not Available	56.15%
Matrix_422	TOE1	Not Available	56.02%
Matrix_31	SPL1	Not Available	56.00%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	56.00%
Matrix_408	GATA12	Not Available	55.92%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.88%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	55.76%
Matrix_338	AP2	Not Available	55.75%
Matrix_450	SPL7	Not Available	55.72%
Matrix_194	HYH; HY5	Not Available	55.70%
Matrix_174	ZAT2	Not Available	55.68%
Motif_244	ABRE-like binding site motif	Not Available	55.66%
Matrix_101	ERF5	Not Available	55.61%
Matrix_416	ASL5	Not Available	55.60%
Matrix_491	AT1G68670; AT3G25790	Not Available	55.58%
Matrix_373	E2FE	Not Available	55.58%
Matrix_271	AT3G16350	Not Available	55.54%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	55.50%
Matrix_181	Dof5.7	Not Available	55.35%
Motif_573	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.34%
Matrix_243	RAP2.12; RAP2.2	Not Available	55.33%
Matrix_476	bHLH115; bHLH34	Not Available	55.29%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.24%
Matrix_61	ATCBF3	Not Available	55.24%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	55.20%
Matrix_33	SPL11; SPL10; SPL2	Not Available	55.07%
Matrix_69	AT2G03500	Not Available	55.04%
Matrix_261	ATERF-1	Not Available	55.03%
Matrix_313	ATMYB65; MYB33	Not Available	54.98%
Matrix_48	PI	Not Available	54.96%
Matrix_363	RAP2.3	Not Available	54.94%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	54.90%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	54.90%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	54.83%
Matrix_152	EIL1; AT5G65100	Not Available	54.82%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	54.80%
Matrix_315	MYB111	Not Available	54.77%
Matrix_469	NAC041; NAC083	Not Available	54.75%
Matrix_518	AT2G21230	Not Available	54.74%
Matrix_17	WRKY22	Not Available	54.70%
Matrix_64	PIF5	Not Available	54.68%
Matrix_335	HSFB2A	Not Available	54.65%
Matrix_290	AP2	Not Available	54.61%
Matrix_505	GATA8	Not Available	54.58%
Matrix_307	RGL2; RGL3	Not Available	54.56%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	54.55%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	54.43%
Matrix_12	EIN3; EIL2	Not Available	54.41%
Matrix_53	MYC3	Not Available	54.39%
Matrix_83	PRR5	Not Available	54.36%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	54.35%
Matrix_424	MYB59	Not Available	54.35%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	54.32%
Matrix_404	OBP4	Not Available	54.31%
Matrix_85	SPL5	Not Available	54.26%
Matrix_224	ERF1	Not Available	54.19%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	53.96%
Matrix_361	AT1G25550	Not Available	53.96%
Matrix_221	SPL7	Not Available	53.89%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	53.85%
Matrix_489	RAV1	Not Available	53.85%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	53.77%
Motif_421	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	53.76%
Matrix_236	CCA1	Not Available	53.74%
Matrix_362	DEAR3	Not Available	53.74%
Matrix_111	ABF3	Not Available	53.74%
Matrix_337	MYB46	Not Available	53.67%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	53.66%
Matrix_162	AtPHR1	Not Available	53.66%
Matrix_336	AT5G08520	Not Available	53.63%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	53.55%
Matrix_430	TOE2	Not Available	53.53%
Matrix_230	ARR11	Not Available	53.42%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	53.36%
Matrix_421	GLK1	Not Available	53.33%
Matrix_16	AT3G04450; PHL1	Not Available	53.29%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	53.29%
Matrix_328	AT1G76580	Not Available	53.27%
Motif_124	ABREMOTIFIIIOSRAB16B	Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	53.26%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.26%
Matrix_324	AT2G01060	Not Available	53.22%
Matrix_299	PFG3	Not Available	53.21%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	53.15%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.10%
Matrix_209	RAP2.6	Not Available	53.04%
Matrix_75	WRKY29	Not Available	52.97%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	52.95%
Matrix_72	CDF2	Not Available	52.94%
Matrix_87	AT1G19000	Not Available	52.94%
Matrix_399	TGA1	Not Available	52.93%
Motif_234	ABADESI2	Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP	52.89%
Matrix_74	LFY	Not Available	52.86%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	52.66%
Matrix_380	ATMYR1	Not Available	52.60%
Matrix_4	ARR14	Not Available	52.54%
Matrix_210	ARR1	Not Available	52.48%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	52.47%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.44%
Matrix_475	AT5G64220	Not Available	52.40%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	52.38%
Motif_652	AUXRETGA2GMGH3	TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224	52.34%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.32%
Motif_644	ABREDISTBBNNAPA	dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	52.32%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	52.32%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	52.27%
Matrix_479	TOE1	Not Available	52.21%
Matrix_349	CDC5	Not Available	52.16%
Matrix_187	CDC5	Not Available	52.16%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	52.16%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	52.11%
Matrix_92	AT1G33760	Not Available	52.03%
Matrix_213	ATHB22	Not Available	51.99%
Motif_407	CE3OSOSEM	CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	51.85%
Matrix_3	WRKY48	Not Available	51.81%
Matrix_119	RRTF1	Not Available	51.78%
Matrix_285	DDF1	Not Available	51.77%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.75%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.73%
Matrix_8	KAN1	Not Available	51.72%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.68%
Matrix_350	ARR14	Not Available	51.66%
Matrix_288	RAP2.3	Not Available	51.66%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	51.65%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	51.58%
Matrix_65	POC1; PIL1	Not Available	51.57%
Matrix_447	RVE1	Not Available	51.53%
Matrix_343	AT2G33710	Not Available	51.35%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.25%
Matrix_501	DAG2	Not Available	51.12%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	51.05%
Matrix_157	LHY; RVE2	Not Available	51.04%
Matrix_451	STY1	Not Available	50.90%
Matrix_115	AGL15	Not Available	50.87%
Matrix_370	WRKY50; WRKY51	Not Available	50.75%
Matrix_99	DOF4.7	Not Available	50.74%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	50.67%
Matrix_255	cdf3	Not Available	50.67%
Matrix_398	TBP2; ATTRB2	Not Available	50.62%
Matrix_334	AT3G23230	Not Available	50.60%
Matrix_415	WRKY27	Not Available	50.57%
Matrix_25	AP3	Not Available	50.55%
Matrix_146	ORA47	Not Available	50.52%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	50.43%
Matrix_106	AT5G47390	Not Available	50.42%
Matrix_139	OBF5	Not Available	50.42%
Matrix_142	ZFP8	Not Available	50.37%
Motif_638	ABRE binding site motif	Not Available	50.34%
Matrix_93	YAB5	Not Available	50.32%
Matrix_425	TIFY2A	Not Available	50.28%
Matrix_84	AtGRF6	Not Available	50.27%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.26%
Matrix_175	Dof5.7	Not Available	50.26%
Matrix_407	AP1	Not Available	50.25%
Motif_326	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	50.24%
Matrix_234	RAP2.3	Not Available	50.18%
Matrix_410	TOE2	Not Available	50.13%
Motif_518	SPHCOREZMC1	Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	50.10%
Matrix_402	TOE1	Not Available	50.08%
Motif_384	SITEIOSPCNA	Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation	50.08%