IGR sequence: | igr2953#chr2#x1=14363467#l=4130 |
---|---|
Mature miRNA sequence: | CUCCGUUUCACAAUAUAAGU |
encoded miRNA: | MIR73s |
Precursor location: | 329 - 537 (positive strand) |
precursor length: | 209 (56 basepairs) |
MIR position: | 1 - 20 (329 - 348) |
MIR length: | 20 (18 paired bases) |
miRNA location TIGR v3: | chr2:14363795>14364003 |
miRNA location TIGR v5: | chr2:14422408>14422616 |
Folding energy: | -38.57 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** CUCCGUUUCA CAAUAUAAGU UGUUUUAGCU AAAAACACAC AUAUUAAGCA UAUUAACUUU 60 ((((((((-( -((((((((( ((((-((((( (((--((((( ,,,,,,,,,, ,,,,,,<<<< UAAAAAGUUC AGCCAAUCAU AAAAGAGACU GUAAAAUAUA AAUAAUCAUA AAGUAUUAAA 120 <<________ _________> >>>>>,,,,, ,,,,,,<<<< <<<------- <<<<------ GUAAUAUAUA ACUUGCAUAA AAACUUGAAA ACAAUUUAUA GUGUGAAACA AAAAAUUUGG 180 <<<<______ __>>>>---- -->>>>---- --->>>>>>> )))))----- -----))))) UCUAUAACAA CUUAUAUUAU AAAACGGAG 209 -)))-))))) ))))))))-) -))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3130_57146+57287_1-20
- gnl|BL_ORD_ID|3130_57146+57291_1-20
- gnl|BL_ORD_ID|3130_57146-57287_123-142
- gnl|BL_ORD_ID|2647_127893+128034_1-20
- gnl|BL_ORD_ID|2647_127893+128038_1-20
- gnl|BL_ORD_ID|2647_127893-128034_123-142
- gnl|BL_ORD_ID|1476_13148-13289_123-142
- gnl|BL_ORD_ID|1476_13148+13289_1-20
- gnl|BL_ORD_ID|1476_13148+13293_1-20
- gnl|BL_ORD_ID|1230_49811+49952_1-20
- gnl|BL_ORD_ID|1230_49811+49956_1-20
- gnl|BL_ORD_ID|1230_49811-49952_123-142
- gnl|BL_ORD_ID|3518_32098+32238_1-20
- gnl|BL_ORD_ID|3518_32098-32238_122-141
- gnl|BL_ORD_ID|3455_84880+85020_1-20
- gnl|BL_ORD_ID|3455_84880-85020_122-141
- gnl|BL_ORD_ID|2891_107992+108131_1-20
- gnl|BL_ORD_ID|2891_107992-108131_121-140
- gnl|BL_ORD_ID|2873_79305+79444_1-20
- gnl|BL_ORD_ID|2873_79305-79444_121-140
- gnl|BL_ORD_ID|1227_120605+120716_1-20
- gnl|BL_ORD_ID|1227_120605+120720_1-20
- gnl|BL_ORD_ID|1227_120605-120716_93-112
- gnl|BL_ORD_ID|2457_48430+48571_1-20
- gnl|BL_ORD_ID|2457_48430-48571_123-142
- gnl|BL_ORD_ID|1396_51729-51870_123-142
- gnl|BL_ORD_ID|1396_51729+51870_1-20
- gnl|BL_ORD_ID|1261_81097+81216_1-20
- gnl|BL_ORD_ID|1261_81097-81216_101-120
- gnl|BL_ORD_ID|3586_15095-15170_57-76
- gnl|BL_ORD_ID|3586_15095+15170_1-20
- gnl|BL_ORD_ID|3579_107428-107569_123-142
- gnl|BL_ORD_ID|3579_107428+107569_1-20
- gnl|BL_ORD_ID|3571_113526+113667_1-20
- gnl|BL_ORD_ID|3571_113526-113667_123-142
- gnl|BL_ORD_ID|3549_139548+139689_1-20
- gnl|BL_ORD_ID|3549_139548-139689_123-142
- gnl|BL_ORD_ID|3540_103740-103995_237-256
- gnl|BL_ORD_ID|3540_103740+103995_1-20
- gnl|BL_ORD_ID|3529_10657+10732_1-20
- gnl|BL_ORD_ID|3529_10657-10732_57-76
- gnl|BL_ORD_ID|3474_82142+82283_1-20
- gnl|BL_ORD_ID|3474_82142-82283_123-142
- gnl|BL_ORD_ID|3469_92935-93081_128-147
- gnl|BL_ORD_ID|3469_92935+93081_1-20
- gnl|BL_ORD_ID|3467_19358-19504_128-147
- gnl|BL_ORD_ID|3467_19358+19504_1-20
- gnl|BL_ORD_ID|3462_94740+94858_1-20
- gnl|BL_ORD_ID|3462_94740-94858_100-119
- gnl|BL_ORD_ID|3453_35117-35255_120-139
- gnl|BL_ORD_ID|3453_35117+35255_1-20
- gnl|BL_ORD_ID|3437_123651-123797_128-147
- gnl|BL_ORD_ID|3437_123651+123797_1-20
- gnl|BL_ORD_ID|3416_15458+15583_1-20
- gnl|BL_ORD_ID|3416_15458-15583_107-126
- gnl|BL_ORD_ID|3407_93726+93846_1-20
- gnl|BL_ORD_ID|3407_93726-93846_102-121
- gnl|BL_ORD_ID|3391_10252+10389_1-20
- gnl|BL_ORD_ID|3391_10252-10389_119-138
- gnl|BL_ORD_ID|3379_58507+58648_1-20
- gnl|BL_ORD_ID|3379_58507-58648_123-142
- gnl|BL_ORD_ID|3349_82796+82968_1-20
- gnl|BL_ORD_ID|3349_82796-82968_154-173
- gnl|BL_ORD_ID|3349_73468-73609_123-142
- gnl|BL_ORD_ID|3349_73468+73609_1-20
- gnl|BL_ORD_ID|3346_2541+2690_1-20
- gnl|BL_ORD_ID|3346_2541-2690_131-150
- gnl|BL_ORD_ID|3344_63556-63651_77-96
- gnl|BL_ORD_ID|3344_63556+63651_1-20
- gnl|BL_ORD_ID|3342_68861-69004_125-144
- gnl|BL_ORD_ID|3342_68861+69004_1-20
- gnl|BL_ORD_ID|3332_126637+126786_1-20
- gnl|BL_ORD_ID|3332_126637-126786_131-150
- gnl|BL_ORD_ID|3319_74589+74734_1-20
- gnl|BL_ORD_ID|3319_74589-74734_127-146
- gnl|BL_ORD_ID|3311_119836+119977_1-20
- gnl|BL_ORD_ID|3311_119836-119977_123-142
- gnl|BL_ORD_ID|3267_27227+27367_1-20
- gnl|BL_ORD_ID|3267_27227-27367_122-141
- gnl|BL_ORD_ID|3242_63870-64035_147-166
- gnl|BL_ORD_ID|3224_110161+110302_1-20
- gnl|BL_ORD_ID|3224_110161-110302_123-142
- gnl|BL_ORD_ID|3201_160537-160633_78-97
- gnl|BL_ORD_ID|3201_160537+160633_1-20
- gnl|BL_ORD_ID|3140_70687-70821_116-135
- gnl|BL_ORD_ID|3140_70687+70821_1-20
- gnl|BL_ORD_ID|3125_89065-89178_95-114
- gnl|BL_ORD_ID|3125_89065+89178_1-20
- gnl|BL_ORD_ID|3115_59767-59908_123-142
- gnl|BL_ORD_ID|3115_59767+59908_1-20
- gnl|BL_ORD_ID|3115_59767+59912_1-20
- gnl|BL_ORD_ID|3071_8467+8606_1-20
- gnl|BL_ORD_ID|3071_8467-8606_121-140
- gnl|BL_ORD_ID|3023_1795+1933_1-20
- gnl|BL_ORD_ID|3023_1795-1933_120-139
- gnl|BL_ORD_ID|3014_136825-136964_121-140
- gnl|BL_ORD_ID|3014_136825+136964_1-20
- gnl|BL_ORD_ID|3008_36410+36551_1-20
- gnl|BL_ORD_ID|3008_36410-36551_123-142
- gnl|BL_ORD_ID|2997_10629+10744_1-20
- gnl|BL_ORD_ID|2997_10629-10744_97-116
- gnl|BL_ORD_ID|2973_142705+142856_1-20
- gnl|BL_ORD_ID|2973_142705-142859_136-155