IGR sequence:igr2835#chr5#x1=14105322#l=9222
Mature miRNA sequence:CCCUCCGUUUUACAAUAUAAG
encoded miRNA:MIR51n
Precursor location:3187 - 3384 (negative strand)
precursor length:198 (58 basepairs)
MIR position:1 - 21 (3364 - 3384)
MIR length:21 (19 paired bases)
miRNA location TIGR v3:chr5:14049208<14049405 chr5:14108508<14108705
miRNA location TIGR v5:chr5:14458266<14458463 chr5:14517566<14517763
Folding energy:-41.42
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** *                                           
CCCUCCGUUU UACAAUAUAA GUUGUUUCAG UUAAGAAUAU UUACUUUGAA AAAGUUCAAC    60
(((((-(((( ((-((((((( (((((((,,, ,,,,<<<<-< <<_______> >>->>>>,,, 

                                                                  
CAAUCAUAAA AGAGACUAAA UAAUAUAAGU AAUCAUAAAA UAUUAAAGUA ACAUAUAAUU   120
,,,,,,,,,, ,,<<<<<<<, [[[[[[____ _________] ]]]]],,,,, ,,,,,,,,[[ 

                                                                  
UGCAUAGAAA CUAGAAAAUA ACUUUUCUUG UAAAACAAAA AAAUUGGUCU AAAACAACUU   180
[[[[-[[[[[ --[[______ _]]]]]]]]] ]]]],,,,,, ,,,>>>>>>> ,))))))))) 

                   
AUAUUAUGAA ACAGAGGG  198
)))))-)))) ))-)))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs