IGR sequence:igr2835#chr5#x1=14105322#l=9222
Mature miRNA sequence:CUCCCUCCGUUUUACAAUAUAAGU
encoded miRNA:MIR51j
Precursor location:3185 - 3386 (negative strand)
precursor length:202 (60 basepairs)
MIR position:1 - 24 (3363 - 3386)
MIR length:24 (22 paired bases)
miRNA location TIGR v3:chr5:14049206<14049407 chr5:14108506<14108707
miRNA location TIGR v5:chr5:14458264<14458465 chr5:14517564<14517765
Folding energy:-45.92
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** ****                                        
CUCCCUCCGU UUUACAAUAU AAGUUGUUUC AGUUAAGAAU AUUUACUUUG AAAAAGUUCA    60
(((((((-(( ((((-((((( (((((((((, ,,,,,,<<<< -<<<______ _>>>->>>>, 

                                                                  
ACCAAUCAUA AAAGAGACUA AAUAAUAUAA GUAAUCAUAA AAUAUUAAAG UAACAUAUAA   120
,,,,,,,,,, ,,,,<<<<<< <,[[[[[[__ __________ _]]]]]],,, ,,,,,,,,,, 

                                                                  
UUUGCAUAGA AACUAGAAAA UAACUUUUCU UGUAAAACAA AAAAAUUGGU CUAAAACAAC   180
[[[[[[-[[[ [[--[[____ ___]]]]]]] ]]]]]],,,, ,,,,,>>>>> >>,))))))) 

                        
UUAUAUUAUG AAACAGAGGG AG  202
)))))))-)) ))))-))))) ))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs