IGR sequence:igr2826#chr5#x1=14046022#l=5701
Mature miRNA sequence:CUUAUAUUGUAAAACGGAGG
encoded miRNA:MIR51k
Precursor location:3188 - 3383 (positive strand)
precursor length:196 (70 basepairs)
MIR position:177 - 196 (3364 - 3383)
MIR length:20 (19 paired bases)
miRNA location TIGR v3:chr5:14049209>14049404 chr5:14108509>14108704
miRNA location TIGR v5:chr5:14458267>14458462 chr5:14517567>14517762
Folding energy:-51.10
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
CCUCUGUUUC AUAAUAUAAG UUGUUUUAGA CCAAUUUUUU UGUUUUACAA GAAAAGUUAU    60
(((((((((- (((((((((( (((((((((, ,,,,<<<<<< <<_____>>> >>>>>,<<<< 

                                                                  
UUUCUAGUUU CUAUGCAAAU UAUAUGUUAC UUUAAUAUUU UAUGAUUACU UAUAUUAUUU   120
<<<--<<<<< ----<<-<<< <<<<-<--<< <--<<<<--- <<<<<____> >>>>->>>>- 

                                                             **** 
AGUCUCUUUU AUGAUUGGUU GAACUUUUUC AAAGUAAAUA UUCUUAACUG AAACAACUUA   180
>>>-->---> >>>>>>->>- >>>>>----- >>>>>>>,,, ,,,,,,,))) )))))))))) 

********** ******
UAUUGUAAAA CGGAGG  196
))))))-))) ))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs