IGR sequence: | igr2826#chr5#x1=14046022#l=5701 |
---|---|
Mature miRNA sequence: | CUCCCUCCGUUUUACAAUAUAAGU |
encoded miRNA: | MIR51j |
Precursor location: | 3185 - 3386 (negative strand) |
precursor length: | 202 (60 basepairs) |
MIR position: | 1 - 24 (3363 - 3386) |
MIR length: | 24 (22 paired bases) |
miRNA location TIGR v3: | chr5:14049206<14049407 chr5:14108506<14108707 |
miRNA location TIGR v5: | chr5:14458264<14458465 chr5:14517564<14517765 |
Folding energy: | -45.92 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **** CUCCCUCCGU UUUACAAUAU AAGUUGUUUC AGUUAAGAAU AUUUACUUUG AAAAAGUUCA 60 (((((((-(( ((((-((((( (((((((((, ,,,,,,<<<< -<<<______ _>>>->>>>, ACCAAUCAUA AAAGAGACUA AAUAAUAUAA GUAAUCAUAA AAUAUUAAAG UAACAUAUAA 120 ,,,,,,,,,, ,,,,<<<<<< <,[[[[[[__ __________ _]]]]]],,, ,,,,,,,,,, UUUGCAUAGA AACUAGAAAA UAACUUUUCU UGUAAAACAA AAAAAUUGGU CUAAAACAAC 180 [[[[[[-[[[ [[--[[____ ___]]]]]]] ]]]]]],,,, ,,,,,>>>>> >>,))))))) UUAUAUUAUG AAACAGAGGG AG 202 )))))))-)) ))))-))))) ))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|1757_105816-105965_1-24
- gnl|BL_ORD_ID|1757_105816+105965_127-150
- gnl|BL_ORD_ID|1688_68347-68526_1-24
- gnl|BL_ORD_ID|1688_68347+68526_157-180
- gnl|BL_ORD_ID|1238_39012-39161_1-24
- gnl|BL_ORD_ID|1238_39012+39161_127-150
- gnl|BL_ORD_ID|34_120767+120916_127-150
- gnl|BL_ORD_ID|34_120767-120916_1-24
- gnl|BL_ORD_ID|1798_139602+139727_103-126
- gnl|BL_ORD_ID|1798_139602-139727_1-24
- gnl|BL_ORD_ID|1960_66737+66886_127-150
- gnl|BL_ORD_ID|1960_66737-66886_1-24
- gnl|BL_ORD_ID|1678_108069-108240_1-24
- gnl|BL_ORD_ID|1678_108069+108240_149-172
- gnl|BL_ORD_ID|3416_15344-15477_1-24
- gnl|BL_ORD_ID|3416_15344+15477_111-134
- gnl|BL_ORD_ID|1540_124161+124371_188-211
- gnl|BL_ORD_ID|1540_124161-124371_1-24
- gnl|BL_ORD_ID|1424_118258+118372_92-115
- gnl|BL_ORD_ID|1424_118143+118372_207-230
- gnl|BL_ORD_ID|1424_118258-118372_1-24
- gnl|BL_ORD_ID|1424_118143-118372_1-24
- gnl|BL_ORD_ID|1295_4740+4887_125-148
- gnl|BL_ORD_ID|1169_142566+142673_85-108
- gnl|BL_ORD_ID|3549_139418-139567_1-24
- gnl|BL_ORD_ID|3549_139418+139567_127-150
- gnl|BL_ORD_ID|3540_103500+103763_241-264
- gnl|BL_ORD_ID|3540_103500-103763_1-24
- gnl|BL_ORD_ID|3518_31969-32117_1-24
- gnl|BL_ORD_ID|3518_31969+32117_126-149
- gnl|BL_ORD_ID|3474_82012-82161_1-24
- gnl|BL_ORD_ID|3474_82012+82161_127-150
- gnl|BL_ORD_ID|3455_84751-84899_1-24
- gnl|BL_ORD_ID|3455_84751+84899_126-149
- gnl|BL_ORD_ID|3453_34994+35140_124-147
- gnl|BL_ORD_ID|3453_34994-35140_1-24
- gnl|BL_ORD_ID|3431_24274-24412_1-24
- gnl|BL_ORD_ID|3431_24274+24412_116-139
- gnl|BL_ORD_ID|3430_7588+7726_116-139
- gnl|BL_ORD_ID|3430_7588-7726_1-24
- gnl|BL_ORD_ID|3386_6837-6992_1-24
- gnl|BL_ORD_ID|3386_6837+6992_133-156
- gnl|BL_ORD_ID|3379_58377-58526_1-24
- gnl|BL_ORD_ID|3379_58377+58526_127-150
- gnl|BL_ORD_ID|3351_15339+15488_127-150
- gnl|BL_ORD_ID|3351_15339-15488_1-24
- gnl|BL_ORD_ID|3349_73342+73491_127-150
- gnl|BL_ORD_ID|3349_73342-73491_1-24
- gnl|BL_ORD_ID|3346_2403-2560_1-24
- gnl|BL_ORD_ID|3346_2403+2560_135-158
- gnl|BL_ORD_ID|3332_126499-126656_1-24
- gnl|BL_ORD_ID|3332_126499+126656_135-158
- gnl|BL_ORD_ID|3319_74455-74608_1-24
- gnl|BL_ORD_ID|3319_74455+74608_131-154
- gnl|BL_ORD_ID|3318_84435-84584_1-24
- gnl|BL_ORD_ID|3318_84435+84584_127-150
- gnl|BL_ORD_ID|3316_63260-63503_1-24
- gnl|BL_ORD_ID|3316_63260+63503_221-244
- gnl|BL_ORD_ID|3242_63720+63893_151-174
- gnl|BL_ORD_ID|3224_110031-110180_1-24
- gnl|BL_ORD_ID|3224_110031+110180_127-150
- gnl|BL_ORD_ID|3214_83729+83851_100-123
- gnl|BL_ORD_ID|3214_83729-83851_1-24
- gnl|BL_ORD_ID|3179_147427+147576_127-150
- gnl|BL_ORD_ID|3179_147427-147576_1-24
- gnl|BL_ORD_ID|3179_44881+44972_69-92
- gnl|BL_ORD_ID|3179_44881-44972_1-24
- gnl|BL_ORD_ID|3140_70568+70710_120-143
- gnl|BL_ORD_ID|3140_70568-70710_1-24
- gnl|BL_ORD_ID|3097_53668+53776_86-109
- gnl|BL_ORD_ID|3097_53668-53776_1-24
- gnl|BL_ORD_ID|3023_1668-1814_1-24
- gnl|BL_ORD_ID|3023_1668+1814_124-147
- gnl|BL_ORD_ID|3008_36280+36429_127-150
- gnl|BL_ORD_ID|2997_10525-10648_1-24
- gnl|BL_ORD_ID|2997_10525+10648_101-124
- gnl|BL_ORD_ID|2991_87496-87645_1-24
- gnl|BL_ORD_ID|2991_87496+87645_127-150
- gnl|BL_ORD_ID|2932_34713+34821_86-109
- gnl|BL_ORD_ID|2932_34713-34821_1-24
- gnl|BL_ORD_ID|2895_39061+39210_127-150
- gnl|BL_ORD_ID|2895_39061-39210_1-24
- gnl|BL_ORD_ID|2891_107865-108011_1-24
- gnl|BL_ORD_ID|2891_107864+108011_125-148
- gnl|BL_ORD_ID|2873_79178-79324_1-24
- gnl|BL_ORD_ID|2873_79177+79324_125-148
- gnl|BL_ORD_ID|2858_8261+8416_133-156
- gnl|BL_ORD_ID|2858_8261-8416_1-24
- gnl|BL_ORD_ID|2836_99331+99479_126-149
- gnl|BL_ORD_ID|2836_99331-99479_1-24
- gnl|BL_ORD_ID|2825_144946+145095_127-150
- gnl|BL_ORD_ID|2825_144946-145095_1-24
- gnl|BL_ORD_ID|2814_29518-29671_1-24
- gnl|BL_ORD_ID|2814_29518+29671_131-154
- gnl|BL_ORD_ID|2812_31106+31231_103-126
- gnl|BL_ORD_ID|2812_31106-31231_1-24
- gnl|BL_ORD_ID|2810_22944+23093_127-150
- gnl|BL_ORD_ID|2773_42160-42309_1-24
- gnl|BL_ORD_ID|2773_42160+42309_127-150
- gnl|BL_ORD_ID|2629_149154+149275_99-122
- gnl|BL_ORD_ID|2621_2223-2348_1-24
- gnl|BL_ORD_ID|2621_2223+2348_103-126
- gnl|BL_ORD_ID|2581_28191+28340_127-150
- gnl|BL_ORD_ID|2581_28191-28340_1-24
- gnl|BL_ORD_ID|2562_54880-55029_1-24
- gnl|BL_ORD_ID|2562_54880+55029_127-150
- gnl|BL_ORD_ID|2531_32422+32571_127-150
- gnl|BL_ORD_ID|2531_32422-32571_1-24
- gnl|BL_ORD_ID|2511_100828-100955_1-24
- gnl|BL_ORD_ID|2511_100828+100955_105-128
- gnl|BL_ORD_ID|2457_48300-48449_1-24
- gnl|BL_ORD_ID|2457_48300+48449_127-150
- gnl|BL_ORD_ID|2415_43918+44067_127-150
- gnl|BL_ORD_ID|2415_43918-44067_1-24
- gnl|BL_ORD_ID|2322_113258+113347_67-90
- gnl|BL_ORD_ID|2322_113258-113347_1-24
- gnl|BL_ORD_ID|2276_164442-164590_1-24
- gnl|BL_ORD_ID|2276_164442+164590_126-149
- gnl|BL_ORD_ID|2257_39139-39288_1-24
- gnl|BL_ORD_ID|2257_39139+39288_127-150
- gnl|BL_ORD_ID|2223_169890-170043_1-24
- gnl|BL_ORD_ID|2223_169890+170043_131-154
- gnl|BL_ORD_ID|2208_27534-27687_1-24
- gnl|BL_ORD_ID|2208_27534+27687_131-154
- gnl|BL_ORD_ID|2181_35528+35633_83-106
- gnl|BL_ORD_ID|2181_35528-35633_1-24
- gnl|BL_ORD_ID|2083_29458+29609_129-152
- gnl|BL_ORD_ID|2083_29458-29609_1-24