IGR sequence: | igr2826#chr5#x1=14046022#l=5701 |
---|---|
Mature miRNA sequence: | CUCCCUCUGUUUCAUAAUAUAAG |
encoded miRNA: | MIR25a |
Precursor location: | 3185 - 3386 (positive strand) |
precursor length: | 202 (73 basepairs) |
MIR position: | 1 - 23 (3185 - 3207) |
MIR length: | 23 (22 paired bases) |
miRNA location TIGR v3: | chr5:14049206>14049407 chr5:14108506>14108707 |
miRNA location TIGR v5: | chr5:14458264>14458465 chr5:14517564>14517765 |
Folding energy: | -58.90 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *** CUCCCUCUGU UUCAUAAUAU AAGUUGUUUU AGACCAAUUU UUUUGUUUUA CAAGAAAAGU 60 (((((((((( ((-((((((( (((((((((( ((,,,,,<<< <<<<<_____ >>>>>>>>,< UAUUUUCUAG UUUCUAUGCA AAUUAUAUGU UACUUUAAUA UUUUAUGAUU ACUUAUAUUA 120 <<<<<<--<< <<<----<<- <<<<<<<-<- -<<<--<<<< ---<<<<<__ __>>>>>->> UUUAGUCUCU UUUAUGAUUG GUUGAACUUU UUCAAAGUAA AUAUUCUUAA CUGAAACAAC 180 >>->>>-->- -->>>>>>>- >>->>>>>-- --->>>>>>> ,,,,,,,,,, )))))))))) UUAUAUUGUA AAACGGAGGG AG 202 )))))))))- )))))))))) ))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3236_57783-57930_126-148
- gnl|BL_ORD_ID|3236_57783+57930_1-23
- gnl|BL_ORD_ID|1009_31762+31890_1-23
- gnl|BL_ORD_ID|1009_31762-31890_107-129
- gnl|BL_ORD_ID|219_51375-51503_107-129
- gnl|BL_ORD_ID|219_51375+51503_1-23
- gnl|BL_ORD_ID|1225_152247-152396_128-150
- gnl|BL_ORD_ID|2899_110958-111190_211-233