IGR sequence:igr2585#chr1#x1=11134319#l=5910
Mature miRNA sequence:AGCUGAAGCUGCCAGCAUGAUCUG
encoded miRNA:MIR36a
Precursor location:3216 - 3562 (positive strand)
precursor length:347 (119 basepairs)
MIR position:1 - 24 (3216 - 3239)
MIR length:24 (21 paired bases)
miRNA location TIGR v3:chr1:11137534>11137880
miRNA location TIGR v5:chr1:11137534>11137880
Folding energy:-113.10
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** ****                                        
AGCUGAAGCU GCCAGCAUGA UCUGGUAAUC GCUACAUACG ACAUACACAC AUCACUAAAC    60
:((((((((( ((-((-(((( (((((((--- ((((--((-( (((((((((( (-((((,,,, 

                                                                  
UUCUUUAUAA UUUAUGCACA CACAUACAGC UCUUAAUGGC CACAACUCAA AGUUAUAAUU   120
,,,,,<<___ __>>,,,<<< <<<<<<<,[[ [______]]] ,,,,,,,,,, [[[[[[[[[[ 

                                                                  
AGUGCAUGAU CUCUAGUUAU UUGACUGCUU UUAAUAUAUG UUUAUGGAUU CACGCAUGUG   180
[[-[______ ]-]]]]]]]] --]]]],,,, ,,,[[[[[[[ [[[[[[,,,, ,{{{{{-{{{ 

                                                                  
UGUGUAUGUA CAUAAUUUAC AUGCAUGCAC UUUGUGUAUG GUACACAUCA AUUUGAACCC   240
{{{{{{{{{{ _______}}} }}}}}}}}}} --}}}}},{{ {{{-{{{--- -{{{{{{___ 

                                                                  
GUUCAAAAUU CUGUUUUUAU UAGUAUAUAU AUAGAUGUAU GUGGUGUGUG UGUCAGUGUG   300
_}}}}}}--- -}}}---}}} }},,,,,,,] ]]]]]]]]]] ]],>>>>>>> >>>,)))))) 

                                                   
UGUGUGUGUU UAUAGAUAGU AGUACUAGGU CAUCCUGCAG CUUCAGU  347
)))))))))) --))--)))) --)))))))) )))-)))))) )))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs