IGR sequence:igr2356#chr3#x1=9872012#l=10062
Mature miRNA sequence:CAGGCAAGUCAUCCUUGGCUAU
encoded miRNA:MIR56a
Precursor location:5149 - 5297 (positive strand)
precursor length:149 (42 basepairs)
MIR position:128 - 149 (5276 - 5297)
MIR length:22 (19 paired bases)
miRNA location TIGR v3:chr3:9877160>9877308
miRNA location TIGR v5:chr3:9877150>9877298
Folding energy:-38.56
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
AUAGCCAAAG AGACUGCCUG AAACCUAACC CGCAAGAUUC AACAUGAUCU CAAAUUAUUA    60
((((((((-( (((((((((( (------((( --((-((((( ((,,<<____ >>,<<<<<<< 

                                                                  
UACCUUUUAA ACGCAUAAUA AUCCAAAAUC CACGAACUUA AAAUUGAAUC AUGGAGGUGA   120
<_________ ____>>>>>> >>,,,,,,,, ,,,,,,,,,, ,,,))))))) -))--)))-- 

       *** ********** *********
AAAAGAUCAG GCAAGUCAUC CUUGGCUAU  149
------)))) ))-))))-)) -))))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs