IGR sequence: | igr216#chr2#x1=1039061#l=1163 |
---|---|
Mature miRNA sequence: | CAAAGGGGUGACCUGAGAACACA |
encoded miRNA: | MIR1a |
Precursor location: | 883 - 971 (negative strand) |
precursor length: | 89 (33 basepairs) |
MIR position: | 1 - 23 (949 - 971) |
MIR length: | 23 (20 paired bases) |
miRNA location TIGR v3: | chr2:1039943<1040031 |
miRNA location TIGR v5: | chr2:1040943<1041031 |
Folding energy: | -33.70 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *** CAAAGGGGUG ACCUGAGAAC ACAAAACUCA AUGGUUUCAA UGGAAAUUUG AAGAAACCAU 60 (((((((((( -(-((-(((( (((----((- (((((((((( (____)))-- --)))))))) AGGAUAUGUG UUCACAUGCC ACUCCUUUG 89 -))---)))) )))-))-)-) )))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|1328_130435-130533_1-23
- gnl|BL_ORD_ID|1328_130435+130533_77-99