IGR sequence:igr2076#chr4#x1=10733600#l=1162
Mature miRNA sequence:CUUAUAUUGUGAAACGAAGGGAAUA
encoded miRNA:MIR55o
Precursor location:404 - 624 (positive strand)
precursor length:221 (67 basepairs)
MIR position:197 - 221 (600 - 624)
MIR length:25 (21 paired bases)
miRNA location TIGR v3:chr4:10734003>10734223
miRNA location TIGR v5:chr4:11769009>11769229
Folding energy:-53.54
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UACUCCCUCC GUUUCAUAAU AUAAGUUGUU UUAUACCAAA UUUUUUGUUU UAUAAUAUAA    60
:::(((((-( (((((((((( (((((((((( (((,<<<<<, ,,,,,[[[[- -[[[[[[[[- 

                                                                  
GUUGUUUUCA AGUUUCUAUG CAAAUUAUAU AUUAUUUUAA UACUUUAUGA UUAUUUAUAU   120
-[[[[_____ _________] ]]]----]]] ]]]]]---]] ]],,,[[[[[ ____]]]]], 

                                                                  
UCUACAGUUU UUUUUAUAAU UGGUUGAACA UUUUAAAAAU AAAUAUUCUU AAUAUACGUA   180
,,,,,,,,,, ,,,,,,,,,> >>>>,,,,,, ,,[[[[[[[[ [--[[[____ ___]]]--]] 

                 **** ********** ********** *
UUUUUAGUUA AAACAACUUA UAUUGUGAAA CGAAGGGAAU A  221
]]]]]]],)) )))))))))) )))))))))) ))-))))):: :

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs