IGR sequence: | igr2076#chr4#x1=10733600#l=1162 |
---|---|
Mature miRNA sequence: | UCCCUUCGUUUCACAAUAUAAG |
encoded miRNA: | MIR55n |
Precursor location: | 407 - 621 (negative strand) |
precursor length: | 215 (63 basepairs) |
MIR position: | 1 - 22 (600 - 621) |
MIR length: | 22 (21 paired bases) |
miRNA location TIGR v3: | chr4:10734006<10734220 |
miRNA location TIGR v5: | chr4:11769012<11769226 |
Folding energy: | -53.29 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ** UCCCUUCGUU UCACAAUAUA AGUUGUUUUA ACUAAAAAUA CGUAUAUUAA GAAUAUUUAU 60 (((((((((( (((-(((((( (((((((((( ((((((<<<< <,,,,,,,,, [[[[[[[[__ UUUUAAAAUG UUCAACCAAU UAUAAAAAAA ACUGUAGAAU AUAAAUAAUC AUAAAGUAUU 120 _____]]]]] ]]],,,,,,[ [[[[______ __]]]]],,, ,,,,,,,,,, ,,,,,>>>>> AAAAUAAUAU AUAAUUUGCA UAGAAACUUG AAAACAACUU AUAUUAUAAA ACAAAAAAUU 180 ,,,[[[[[[[ [-------[[ ________]] ---------] ]]]]]]],,, ,,,,,,,,)) UGGUAUAAAA CAACUUAUAU UAUGAAACGG AGGGA 215 ))))-))))) )))))))))) )-)))))))) )))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|2729_64943+65091_128-149
- gnl|BL_ORD_ID|2729_64943-65091_1-22
- gnl|BL_ORD_ID|2608_89370+89519_129-150
- gnl|BL_ORD_ID|2608_89370-89519_1-22
- gnl|BL_ORD_ID|1990_84920-85067_1-22
- gnl|BL_ORD_ID|1990_84920+85067_127-148