IGR sequence: | igr2076#chr4#x1=10733600#l=1162 |
---|---|
Mature miRNA sequence: | UCCCUUCGUUUCACAAUAUAAGU |
encoded miRNA: | MIR55j |
Precursor location: | 407 - 621 (negative strand) |
precursor length: | 215 (63 basepairs) |
MIR position: | 1 - 23 (599 - 621) |
MIR length: | 23 (22 paired bases) |
miRNA location TIGR v3: | chr4:10734006<10734220 |
miRNA location TIGR v5: | chr4:11769012<11769226 |
Folding energy: | -53.29 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *** UCCCUUCGUU UCACAAUAUA AGUUGUUUUA ACUAAAAAUA CGUAUAUUAA GAAUAUUUAU 60 (((((((((( (((-(((((( (((((((((( ((((((<<<< <,,,,,,,,, [[[[[[[[__ UUUUAAAAUG UUCAACCAAU UAUAAAAAAA ACUGUAGAAU AUAAAUAAUC AUAAAGUAUU 120 _____]]]]] ]]],,,,,,[ [[[[______ __]]]]],,, ,,,,,,,,,, ,,,,,>>>>> AAAAUAAUAU AUAAUUUGCA UAGAAACUUG AAAACAACUU AUAUUAUAAA ACAAAAAAUU 180 ,,,[[[[[[[ [-------[[ ________]] ---------] ]]]]]]],,, ,,,,,,,,)) UGGUAUAAAA CAACUUAUAU UAUGAAACGG AGGGA 215 ))))-))))) )))))))))) )-)))))))) )))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3237_77794-78014_1-23
- gnl|BL_ORD_ID|3237_77794+78014_199-221
- gnl|BL_ORD_ID|2764_2969+3116_126-148
- gnl|BL_ORD_ID|2764_2969-3116_1-23
- gnl|BL_ORD_ID|2161_65938-66083_1-23
- gnl|BL_ORD_ID|2161_65938+66083_124-146
- gnl|BL_ORD_ID|1778_16445+16630_164-186
- gnl|BL_ORD_ID|1778_16445-16630_1-23
- gnl|BL_ORD_ID|1573_141322+141415_72-94
- gnl|BL_ORD_ID|1573_141322-141415_1-23
- gnl|BL_ORD_ID|1199_42948-43093_1-23
- gnl|BL_ORD_ID|1199_42948+43093_124-146
- gnl|BL_ORD_ID|115_143044+143229_164-186
- gnl|BL_ORD_ID|115_143044-143229_1-23
- gnl|BL_ORD_ID|3349_73343+73490_126-148
- gnl|BL_ORD_ID|3349_73343-73490_1-23
- gnl|BL_ORD_ID|2891_107866-108011_1-23
- gnl|BL_ORD_ID|2891_107866+108011_124-146
- gnl|BL_ORD_ID|2873_79179-79324_1-23
- gnl|BL_ORD_ID|2873_79179+79324_124-146
- gnl|BL_ORD_ID|2812_31107+31230_102-124
- gnl|BL_ORD_ID|2812_31107-31230_1-23
- gnl|BL_ORD_ID|2621_2225-2348_1-23
- gnl|BL_ORD_ID|2621_2225+2348_102-124
- gnl|BL_ORD_ID|3586_14977-15058_1-23
- gnl|BL_ORD_ID|3586_14977+15058_60-82
- gnl|BL_ORD_ID|3549_139420-139567_1-23
- gnl|BL_ORD_ID|3549_139420+139567_126-148
- gnl|BL_ORD_ID|3540_103501+103762_240-262
- gnl|BL_ORD_ID|3540_103501-103762_1-23
- gnl|BL_ORD_ID|3529_10654+10735_60-82
- gnl|BL_ORD_ID|3529_10654-10735_1-23
- gnl|BL_ORD_ID|3518_31971-32117_1-23
- gnl|BL_ORD_ID|3518_31971+32117_125-147
- gnl|BL_ORD_ID|3474_82014-82161_1-23
- gnl|BL_ORD_ID|3474_82014+82161_126-148
- gnl|BL_ORD_ID|3455_84753-84899_1-23
- gnl|BL_ORD_ID|3455_84753+84899_125-147
- gnl|BL_ORD_ID|3453_34995+35139_123-145
- gnl|BL_ORD_ID|3453_34995-35139_1-23
- gnl|BL_ORD_ID|3416_15346-15477_1-23
- gnl|BL_ORD_ID|3416_15346+15477_110-132
- gnl|BL_ORD_ID|3379_58379-58526_1-23
- gnl|BL_ORD_ID|3379_58379+58526_126-148
- gnl|BL_ORD_ID|3346_2405-2560_1-23
- gnl|BL_ORD_ID|3346_2405+2560_134-156
- gnl|BL_ORD_ID|3332_126501-126656_1-23
- gnl|BL_ORD_ID|3332_126501+126656_134-156
- gnl|BL_ORD_ID|3319_74457-74608_1-23
- gnl|BL_ORD_ID|3319_74457+74608_130-152
- gnl|BL_ORD_ID|3246_85318+85465_126-148
- gnl|BL_ORD_ID|3246_85318-85465_1-23
- gnl|BL_ORD_ID|3242_82961+83058_76-98
- gnl|BL_ORD_ID|3242_63721+63892_150-172
- gnl|BL_ORD_ID|3224_110033-110180_1-23
- gnl|BL_ORD_ID|3224_110033+110180_126-148
- gnl|BL_ORD_ID|3146_68036-68183_1-23
- gnl|BL_ORD_ID|3146_68036+68183_126-148
- gnl|BL_ORD_ID|3140_70569+70709_119-141
- gnl|BL_ORD_ID|3140_70569-70709_1-23
- gnl|BL_ORD_ID|3097_53669+53775_85-107
- gnl|BL_ORD_ID|3097_53669-53775_1-23
- gnl|BL_ORD_ID|3023_1670-1814_1-23
- gnl|BL_ORD_ID|3023_1670+1814_123-145
- gnl|BL_ORD_ID|3008_36282-36429_1-23
- gnl|BL_ORD_ID|3008_36282+36429_126-148
- gnl|BL_ORD_ID|2997_10527-10648_1-23
- gnl|BL_ORD_ID|2997_10527+10648_100-122
- gnl|BL_ORD_ID|2932_34714+34820_85-107
- gnl|BL_ORD_ID|2932_34714-34820_1-23
- gnl|BL_ORD_ID|2836_99332+99478_125-147
- gnl|BL_ORD_ID|2836_99332-99478_1-23
- gnl|BL_ORD_ID|2810_22946-23093_1-23
- gnl|BL_ORD_ID|2810_22946+23093_126-148
- gnl|BL_ORD_ID|2773_42162-42309_1-23
- gnl|BL_ORD_ID|2773_42162+42309_126-148
- gnl|BL_ORD_ID|2751_71290+71405_94-116
- gnl|BL_ORD_ID|2751_71289-71405_1-23
- gnl|BL_ORD_ID|2629_149155+149274_98-120
- gnl|BL_ORD_ID|2629_149155-149274_1-23
- gnl|BL_ORD_ID|2562_54882-55029_1-23
- gnl|BL_ORD_ID|2562_54882+55029_126-148
- gnl|BL_ORD_ID|2531_32423+32570_126-148
- gnl|BL_ORD_ID|2531_32423-32570_1-23
- gnl|BL_ORD_ID|2511_100830-100955_1-23
- gnl|BL_ORD_ID|2511_100831+100955_103-125
- gnl|BL_ORD_ID|2457_48302-48449_1-23
- gnl|BL_ORD_ID|2457_48302+48449_126-148
- gnl|BL_ORD_ID|2415_43919+44066_126-148
- gnl|BL_ORD_ID|2322_113259+113346_66-88
- gnl|BL_ORD_ID|2322_113259-113346_1-23
- gnl|BL_ORD_ID|2257_39141-39288_1-23
- gnl|BL_ORD_ID|2257_39141+39288_126-148
- gnl|BL_ORD_ID|2181_35529+35632_82-104
- gnl|BL_ORD_ID|2181_35529-35632_1-23
- gnl|BL_ORD_ID|2180_160076+160237_140-162
- gnl|BL_ORD_ID|2091_50440+50586_125-147
- gnl|BL_ORD_ID|2091_50440-50586_1-23
- gnl|BL_ORD_ID|2089_60128-60275_1-23
- gnl|BL_ORD_ID|2089_60128+60275_126-148
- gnl|BL_ORD_ID|2083_29459+29608_128-150
- gnl|BL_ORD_ID|2083_29459-29608_1-23
- gnl|BL_ORD_ID|2070_111243-111404_1-23
- gnl|BL_ORD_ID|2070_111243+111404_140-162
- gnl|BL_ORD_ID|2038_109986-110133_1-23
- gnl|BL_ORD_ID|2038_109986+110133_126-148
- gnl|BL_ORD_ID|1990_19586+19727_120-142
- gnl|BL_ORD_ID|1990_19586-19727_1-23
- gnl|BL_ORD_ID|1986_130665+130810_124-146
- gnl|BL_ORD_ID|1986_130665-130810_1-23
- gnl|BL_ORD_ID|1974_15526-15673_1-23
- gnl|BL_ORD_ID|1974_15526+15673_126-148