IGR sequence:igr2076#chr4#x1=10733600#l=1162
Mature miRNA sequence:UCCCUUCGUUUCACAAUAUAAGUU
encoded miRNA:MIR55e
Precursor location:407 - 621 (negative strand)
precursor length:215 (63 basepairs)
MIR position:1 - 24 (598 - 621)
MIR length:24 (23 paired bases)
miRNA location TIGR v3:chr4:10734006<10734220
miRNA location TIGR v5:chr4:11769012<11769226
Folding energy:-53.29
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** ****                                        
UCCCUUCGUU UCACAAUAUA AGUUGUUUUA ACUAAAAAUA CGUAUAUUAA GAAUAUUUAU    60
(((((((((( (((-(((((( (((((((((( ((((((<<<< <,,,,,,,,, [[[[[[[[__ 

                                                                  
UUUUAAAAUG UUCAACCAAU UAUAAAAAAA ACUGUAGAAU AUAAAUAAUC AUAAAGUAUU   120
_____]]]]] ]]],,,,,,[ [[[[______ __]]]]],,, ,,,,,,,,,, ,,,,,>>>>> 

                                                                  
AAAAUAAUAU AUAAUUUGCA UAGAAACUUG AAAACAACUU AUAUUAUAAA ACAAAAAAUU   180
,,,[[[[[[[ [-------[[ ________]] ---------] ]]]]]]],,, ,,,,,,,,)) 

                                      
UGGUAUAAAA CAACUUAUAU UAUGAAACGG AGGGA  215
))))-))))) )))))))))) )-)))))))) )))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs