IGR sequence:igr2076#chr4#x1=10733600#l=1162
Mature miRNA sequence:CCUUCGUUUCACAAUAUAAGUU
encoded miRNA:MIR55d
Precursor location:409 - 619 (negative strand)
precursor length:211 (61 basepairs)
MIR position:1 - 22 (598 - 619)
MIR length:22 (21 paired bases)
miRNA location TIGR v3:chr4:10734008<10734218
miRNA location TIGR v5:chr4:11769014<11769224
Folding energy:-48.09
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** **                                          
CCUUCGUUUC ACAAUAUAAG UUGUUUUAAC UAAAAAUACG UAUAUUAAGA AUAUUUAUUU    60
(((((((((( (-(((((((( (((((((((( ((((<<<<<, ,,,,,,,,[[ [[[[[[____ 

                                                                  
UUAAAAUGUU CAACCAAUUA UAAAAAAAAC UGUAGAAUAU AAAUAAUCAU AAAGUAUUAA   120
___]]]]]]] ],,,,,,[[[ [[________ ]]]]],,,,, ,,,,,,,,,, ,,,>>>>>,, 

                                                                  
AAUAAUAUAU AAUUUGCAUA GAAACUUGAA AACAACUUAU AUUAUAAAAC AAAAAAUUUG   180
,[[[[[[[[- ------[[__ ______]]-- -------]]] ]]]]],,,,, ,,,,,,)))) 

                                  
GUAUAAAACA ACUUAUAUUA UGAAACGGAG G  211
))-))))))) )))))))))- )))))))))) )

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs