| IGR sequence: | igr2076#chr4#x1=10733600#l=1162 |
|---|---|
| Mature miRNA sequence: | AACAACUUAUAUUGUGAAACGAAGG |
| encoded miRNA: | MIR55a |
| Precursor location: | 409 - 619 (positive strand) |
| precursor length: | 211 (65 basepairs) |
| MIR position: | 187 - 211 (595 - 619) |
| MIR length: | 25 (24 paired bases) |
| miRNA location TIGR v3: | chr4:10734008>10734218 |
| miRNA location TIGR v5: | chr4:11769014>11769224 |
| Folding energy: | -47.44 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster001 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
CCUCCGUUUC AUAAUAUAAG UUGUUUUAUA CCAAAUUUUU UGUUUUAUAA UAUAAGUUGU 60
(((-(((((( (((((((((( ((((((((,< <<<<,,,,,, [[[[--[[[[ [[[[--[[[[
UUUCAAGUUU CUAUGCAAAU UAUAUAUUAU UUUAAUACUU UAUGAUUAUU UAUAUUCUAC 120
__________ ____]]]]-- --]]]]]]]] ---]]]],,, [[[[[____] ]]]],,,,,,
AGUUUUUUUU AUAAUUGGUU GAACAUUUUA AAAAUAAAUA UUCUUAAUAU ACGUAUUUUU 180
,,,,,,,,,, ,,,,>>>>>, ,,,,,,,[[[ [[[[[[--[[ [_______]] ]--]]]]]]]
**** ********** ********** *
AGUUAAAACA ACUUAUAUUG UGAAACGAAG G 211
]],))))))) )))))))))) )))))))-)) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g72390.1 | 68408.m07681 expressed protein | 4 | 1 |
Rice homologs
- gnl|BL_ORD_ID|1208_16171-16326_1-25
- gnl|BL_ORD_ID|1208_16171+16326_132-156