IGR sequence:igr1656#chr3#x1=6684108#l=3037
Mature miRNA sequence:UCUGUAUUUGGAAGUAAUGA
encoded miRNA:MIR42a
Precursor location:1861 - 2210 (positive strand)
precursor length:350 (115 basepairs)
MIR position:1 - 20 (1861 - 1880)
MIR length:20 (20 paired bases)
miRNA location TIGR v3:chr3:6685968>6686317
miRNA location TIGR v5:chr3:6685968>6686317
Folding energy:-128.65
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** **********                                             
UCUGUAUUUG GAAGUAAUGA UCUUAGACUC CACGCGACUG UGUUCUUUAU UGUUUUGUUU    60
(((((((((( (((((((((( (((((((((( ((((((((-( (((((((((( (,,,,,,,,, 

                                                                  
CGAAGAGCGG UGUGAUAUUC UUAUUGGCUU GCAACCAAAA UGGGCUCCCA AAAAGAAAGC   120
,<<<<-<-<< <<<----<<< <<-<<<<--- <<--<<____ _>>>>-->>> >->>>>>--- 

                                                                  
AAGCACCACC ACUUCUUCUA UCUGAUGAGG GAACACUUUU AACAUAAAAG UCACACAACC   180
-->>>>>->- ->>>>,,<<< <<-<<-<<<- -<<-<<<--- <<<,,,,,,[ [[[[----[[ 

                                                                  
AUAACAUAUA UUCAAAUUUC GGGUGAUAAC AUAAUGAUAA AAAUAGCACA ACCCAAUUAA   240
__________ __________ ]]]]]]],,, ,,,[[[[--[ [[[[[----- --[[[[--[[ 

                                                                  
CUACAUGUUU UGGUCAUAUU UUAUUCAUAG UUUAUAGUUU UUUCUUUUUU UUUGGUAGGA   300
[_____]]]] ]]]---]]]] ]]--]]]],> >>--->>>-> >-->>>->>- --->>>>>,) 

                                                       
GUAAAGAACA CUGUCGCGUG GAGUCUAAGA UCAUUACUUC CAAAUACAGA   350
)))))))))) )-)))))))) )))))))))) )))))))))) ))))))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs