IGR sequence: | igr795#chr5#x1=3454190#l=5083 |
---|---|
Mature miRNA sequence: | UGUGUGCUCACUCUCUUCUGUCA |
encoded miRNA: | MIR17e |
Precursor location: | 2459 - 2544 (positive strand) |
precursor length: | 86 (23 basepairs) |
MIR position: | 64 - 86 (2522 - 2544) |
MIR length: | 23 (21 paired bases) |
miRNA location TIGR v3: | chr5:3456648>3456733 |
miRNA location TIGR v5: | chr5:3456648>3456733 |
Folding energy: | -33.55 |
BLAST hit against RFAM Atha miRNAs: | ath-MIR156d |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UGACAAAAAG AGAGUGAGCA CGCAAAAGCA ACCAUAUACA AAACUUUUAU ACAACUUCCC 60 :((((--((( (((((((((( ((((((____ __________ __________ __________ ******* ********** ****** CUUUGUGUGC UCACUCUCUU CUGUCA 86 _))))))))) )))))))))) -)))):

Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|2024_146441+146550_88-110
- gnl|BL_ORD_ID|2024_146441-146550_1-23
- gnl|BL_ORD_ID|2021_81256-81365_1-23
- gnl|BL_ORD_ID|2021_81256+81365_88-110
- gnl|BL_ORD_ID|490_72536-72621_1-23
- gnl|BL_ORD_ID|490_72536+72621_64-86
- gnl|BL_ORD_ID|490_72533+72621_67-89
- gnl|BL_ORD_ID|490_72541+72621_59-81
- gnl|BL_ORD_ID|490_72151-72241_1-23
- gnl|BL_ORD_ID|490_72151+72241_69-91
- gnl|BL_ORD_ID|490_72147+72241_73-95
- gnl|BL_ORD_ID|457_25565-25650_1-23
- gnl|BL_ORD_ID|457_25565+25650_64-86
- gnl|BL_ORD_ID|457_25562+25650_67-89
- gnl|BL_ORD_ID|457_25570+25650_59-81
- gnl|BL_ORD_ID|457_25180-25270_1-23
- gnl|BL_ORD_ID|457_25180+25270_69-91
- gnl|BL_ORD_ID|457_25176+25270_73-95