IGR sequence: | igr6102#chr1#x1=28165078#l=7022 |
---|---|
Mature miRNA sequence: | AUUGGCAGUAUGCCCACCUCC |
encoded miRNA: | MIR78a |
Precursor location: | 4766 - 4860 (negative strand) |
precursor length: | 95 (26 basepairs) |
MIR position: | 1 - 21 (4840 - 4860) |
MIR length: | 21 (16 paired bases) |
miRNA location TIGR v3: | chr1:28169843<28169937 |
miRNA location TIGR v5: | chr1:28573715<28573809 |
Folding energy: | -34.60 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** * AUUGGCAGUA UGCCCACCUC CUCUUACGAA ACACACCGUA GAUACGUACA CUUAUUACAC 60 :((((((--- ((-((((((( ((((<<<<__ ______>>>> ,,,,,<<<__ _____>>>,, AUAAAUAUAG AGAGAGGAGG UGGACAGAAU GCCAA 95 ,,,,,,,,,, ,,)))))))) )))-))---) )))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|1524_122104-122187_1-21
- gnl|BL_ORD_ID|1524_122104+122187_64-84
- gnl|BL_ORD_ID|1456_62473+62556_64-84
- gnl|BL_ORD_ID|1456_62473-62556_1-21