IGR sequence: | igr5553#chr1#x1=25868910#l=5170 |
---|---|
Mature miRNA sequence: | GGAGUUCCCCCAAACACUUCA |
encoded miRNA: | MIR34c |
Precursor location: | 870 - 951 (positive strand) |
precursor length: | 82 (28 basepairs) |
MIR position: | 1 - 21 (870 - 890) |
MIR length: | 21 (18 paired bases) |
miRNA location TIGR v3: | chr1:25869779>25869860 |
miRNA location TIGR v5: | chr1:26273651>26273732 |
Folding energy: | -32.10 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** * GGAGUUCCCC CAAACACUUC AGUGGAAUUA ACUGUUAGCU UACUGAAUAA CAAAUUUCCA 60 (((((((-(( --(((((((( (-(((((--- --(((((___ _______))) ))---))))) AUGAAGUGUU CAGGAGAACU CU 82 -))))))))) --))-))))) ))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|2693_32082-32203_102-122
- gnl|BL_ORD_ID|2693_32082+32203_1-21
- gnl|BL_ORD_ID|2437_51021-51142_102-122
- gnl|BL_ORD_ID|2437_51021+51142_1-21