IGR sequence: | igr4835#chr1#x1=22526634#l=6090 |
---|---|
Mature miRNA sequence: | GAUAUUGGCACGGCUCAAUCA |
encoded miRNA: | MIR46c |
Precursor location: | 3258 - 3336 (positive strand) |
precursor length: | 79 (29 basepairs) |
MIR position: | 1 - 21 (3258 - 3278) |
MIR length: | 21 (18 paired bases) |
miRNA location TIGR v3: | chr1:22529891>22529969 |
miRNA location TIGR v5: | chr1:22933763>22933841 |
Folding energy: | -32.60 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** * GAUAUUGGCA CGGCUCAAUC AAAUAAACCG AUCUUUAAAA CAAAAGAGUA CGGUUUUCUG 60 ((((((((-- (((-(((((( (---(((((( -(((((____ __)))))--- ))))))--)) AUUGAACCGC ACCAAUAUC 79 )))))-)))- -))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|2822_24365+24463_1-21
- gnl|BL_ORD_ID|2822_24365-24463_79-99
- gnl|BL_ORD_ID|0_119694-119808_95-115
- gnl|BL_ORD_ID|0_119694+119808_1-21