IGR sequence:igr444#chr2#x1=2195423#l=2723
Mature miRNA sequence:CUCCCUCCGUUUCACAAUAUAAGUU
encoded miRNA:MIR89n
Precursor location:841 - 1203 (positive strand)
precursor length:363 (94 basepairs)
MIR position:339 - 363 (1179 - 1203)
MIR length:25 (23 paired bases)
miRNA location TIGR v3:chr2:2196263>2196625
miRNA location TIGR v5:chr2:2197263>2197625
Folding energy:-70.35
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
AAUUUAUAUU AUAAAAUGGA GGGAGUAGGU UUUAAUAAUA CAUAUAUAAC GCUUUUGUUA    60
(((((((((( -(-((((((( (((((((-(- -(((((((,, ,,,,,,,,,, ,,<<<<<--< 

                                                                  
AAAUGUUAAA CGUUGACUAA UUUAUUGUGU AUACAUGAUA UUUGGAGAAU AAAUUUGUCA   120
<<<<<<<<<< -<<<<<,,,, ,,[[[--[[_ ___]]--]]] ,,,[[[[,,{ {{{---{{{{ 

                                                                  
AUUAUAAAUA CUUGUAGAUU UAAUUGACCA UUUUAACUUU GAAAGCUCAA AUUUUUUUCA   180
{{{{----{{ ____}}---- }}}}}}}}-- -}}}},,{{{ {{____}}}} },,,,,,,,, 

                                                                  
UUCCUAAUUU AAAAGUUUAC UAAAAGUUUC AAUUUUUUCA ACAUUUUUUC AAAAAAAGAU   240
]]]],,,,,, ,,,,,,,,,, ,,,,,,,,>> >>>->>>--> >>>>>>>--> >>>>,,,,,, 

                                                                  
AUUAUACCAC AACUAUUACG AGUAACUAAC CUACUUGCAU GACCAUUUCU UUACUCAUUU   300
,,,,,,,,,, ,,{{{{{{{{ -{-{{{____ __________ __________ __________ 

                                         ** ********** ********** 
UGUUUCCGUA GUAGAAAUAA UUUUUUGUUA GUUCGAUACU CCCUCCGUUU CACAAUAUAA   360
_}}}-}}}}} }}}},,,,,, ,,,,)))))) )--)--)))) )))))))))) -)-))))))) 

***
GUU  363
)))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs