IGR sequence: | igr3964#chr1#x1=18832457#l=4446 |
---|---|
Mature miRNA sequence: | UUACUCCCUCCGUUUCACGAUAUAA |
encoded miRNA: | MIR23e |
Precursor location: | 3105 - 3326 (negative strand) |
precursor length: | 222 (74 basepairs) |
MIR position: | 1 - 25 (3302 - 3326) |
MIR length: | 25 (24 paired bases) |
miRNA location TIGR v3: | chr1:18835561<18835782 |
miRNA location TIGR v5: | chr1:19239433<19239654 |
Folding energy: | -57.74 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ***** UUACUCCCUC CGUUUCACGA UAUAAAUUAU UUUAGCUAAA AGCACGUAAA UUAAAAAUAU 60 :((((((((( (((((((((( (((((-((-( (((((((((( ,,,,,<<<<< <<<,,,,[[[ UUACUUUUAA AAAGUUCAGC CAAUUAUAAA AGAAACUGUA GAAUAUAAAU AAUCAUAAAG 120 [[[-[[[[[- --[[[[[___ __________ _]-]]]]-]] ]]]--]]]]] ],,,,,,,,[ UAUUAAAGUA AUAUAUAAUU UGCAUAGAAA CUUGAAAACA ACUUAUAUUG UGAAACAAAA 180 [[[[[___]] ]]]],>>>>> >>>,,,,,,, ,[[[---[[[ [______]]] ]----]]],, AAUUUGGUCU AAAACAACUU AUAUUGUGAA ACGGAGGGAG UG 222 ,,)))))-)) ))))-))-)) )))))))))) )))))))))) ))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3224_110023-110178_1-25
- gnl|BL_ORD_ID|3224_110024+110178_131-155
- gnl|BL_ORD_ID|2997_10518-10646_1-25
- gnl|BL_ORD_ID|2997_10518+10646_105-129
- gnl|BL_ORD_ID|2629_149152+149278_103-127
- gnl|BL_ORD_ID|2629_149151-149278_1-25
- gnl|BL_ORD_ID|2038_109976-110131_1-25
- gnl|BL_ORD_ID|2038_109976+110131_132-156
- gnl|BL_ORD_ID|1911_34429+34583_131-155
- gnl|BL_ORD_ID|1911_34428-34583_1-25
- gnl|BL_ORD_ID|1771_14848-14981_1-25
- gnl|BL_ORD_ID|1771_14849+14981_109-133
- gnl|BL_ORD_ID|1660_43644-43732_1-25
- gnl|BL_ORD_ID|1660_43645+43732_64-88
- gnl|BL_ORD_ID|1396_51601+51755_131-155
- gnl|BL_ORD_ID|1396_51600-51755_1-25
- gnl|BL_ORD_ID|1162_61260-61412_1-25
- gnl|BL_ORD_ID|1162_61260+61412_129-153
- gnl|BL_ORD_ID|1006_23794-23921_1-25
- gnl|BL_ORD_ID|1006_23795+23921_103-127
- gnl|BL_ORD_ID|933_86800+86954_131-155
- gnl|BL_ORD_ID|933_86800-86954_1-25
- gnl|BL_ORD_ID|409_93846-93984_1-25
- gnl|BL_ORD_ID|409_93846+93984_115-139
- gnl|BL_ORD_ID|343_68348+68503_132-156
- gnl|BL_ORD_ID|343_68348-68503_1-25
- gnl|BL_ORD_ID|142_82400-82554_1-25
- gnl|BL_ORD_ID|142_82400+82554_131-155
- gnl|BL_ORD_ID|2223_13506+13660_131-155