IGR sequence: | igr3964#chr1#x1=18832457#l=4446 |
---|---|
Mature miRNA sequence: | UACUCCCUCCGUUUCACGAUAUAA |
encoded miRNA: | MIR23d |
Precursor location: | 3105 - 3325 (negative strand) |
precursor length: | 221 (74 basepairs) |
MIR position: | 1 - 24 (3302 - 3325) |
MIR length: | 24 (24 paired bases) |
miRNA location TIGR v3: | chr1:18835561<18835781 |
miRNA location TIGR v5: | chr1:19239433<19239653 |
Folding energy: | -57.54 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **** UACUCCCUCC GUUUCACGAU AUAAAUUAUU UUAGCUAAAA GCACGUAAAU UAAAAAUAUU 60 (((((((((( (((((((((( ((((-((-(( (((((((((, ,,,,<<<<<< <<,,,,[[[[ UACUUUUAAA AAGUUCAGCC AAUUAUAAAA GAAACUGUAG AAUAUAAAUA AUCAUAAAGU 120 [[-[[[[[-- -[[[[[____ __________ ]-]]]]-]]] ]]--]]]]]] ,,,,,,,,[[ AUUAAAGUAA UAUAUAAUUU GCAUAGAAAC UUGAAAACAA CUUAUAUUGU GAAACAAAAA 180 [[[[___]]] ]]],>>>>>> >>,,,,,,,, [[[---[[[[ ______]]]] ----]]],,, AUUUGGUCUA AAACAACUUA UAUUGUGAAA CGGAGGGAGU G 221 ,)))))-))) )))-))-))) )))))))))) )))))))))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3084_165762+165846_62-85
- gnl|BL_ORD_ID|3084_165762-165846_1-24
- gnl|BL_ORD_ID|1156_28113+28197_62-85
- gnl|BL_ORD_ID|1156_28113-28197_1-24
- gnl|BL_ORD_ID|3540_103498+103765_245-268
- gnl|BL_ORD_ID|3540_103498-103765_1-24
- gnl|BL_ORD_ID|3518_31963-32115_1-24
- gnl|BL_ORD_ID|3518_31963+32115_130-153
- gnl|BL_ORD_ID|3501_9124-9277_1-24
- gnl|BL_ORD_ID|3501_9124+9277_131-154
- gnl|BL_ORD_ID|3455_84745-84897_1-24
- gnl|BL_ORD_ID|3455_84745+84897_130-153
- gnl|BL_ORD_ID|3453_34992+35142_128-151
- gnl|BL_ORD_ID|3453_34992-35142_1-24
- gnl|BL_ORD_ID|3379_58371-58524_1-24
- gnl|BL_ORD_ID|3379_58371+58524_131-154
- gnl|BL_ORD_ID|3349_73340+73493_131-154
- gnl|BL_ORD_ID|3349_73340-73493_1-24
- gnl|BL_ORD_ID|3346_2397-2558_1-24
- gnl|BL_ORD_ID|3346_2397+2558_139-162
- gnl|BL_ORD_ID|3332_126493-126654_1-24
- gnl|BL_ORD_ID|3332_126493+126654_139-162
- gnl|BL_ORD_ID|3319_74449-74606_1-24
- gnl|BL_ORD_ID|3319_74449+74606_135-158
- gnl|BL_ORD_ID|3140_70566+70712_124-147
- gnl|BL_ORD_ID|3140_70566-70712_1-24
- gnl|BL_ORD_ID|3097_53666+53778_90-113
- gnl|BL_ORD_ID|3097_53666-53778_1-24
- gnl|BL_ORD_ID|3023_1662-1812_1-24
- gnl|BL_ORD_ID|3023_1662+1812_128-151
- gnl|BL_ORD_ID|3008_36274-36427_1-24
- gnl|BL_ORD_ID|3008_36274+36427_131-154
- gnl|BL_ORD_ID|2932_34711+34823_90-113
- gnl|BL_ORD_ID|2932_34711-34823_1-24
- gnl|BL_ORD_ID|2895_39059+39212_131-154
- gnl|BL_ORD_ID|2895_39059-39212_1-24
- gnl|BL_ORD_ID|2891_107858+108009_129-152
- gnl|BL_ORD_ID|2873_79171+79322_129-152
- gnl|BL_ORD_ID|2812_31104+31233_107-130
- gnl|BL_ORD_ID|2812_31104-31233_1-24
- gnl|BL_ORD_ID|2621_2217-2346_1-24
- gnl|BL_ORD_ID|2621_2217+2346_107-130
- gnl|BL_ORD_ID|2531_32420+32573_131-154
- gnl|BL_ORD_ID|2531_32420-32573_1-24
- gnl|BL_ORD_ID|2511_100822-100953_1-24
- gnl|BL_ORD_ID|2511_100822+100953_109-132
- gnl|BL_ORD_ID|2457_48294-48447_1-24
- gnl|BL_ORD_ID|2457_48294+48447_131-154
- gnl|BL_ORD_ID|2415_43916+44069_131-154
- gnl|BL_ORD_ID|2415_43916-44069_1-24
- gnl|BL_ORD_ID|2322_113256+113349_71-94
- gnl|BL_ORD_ID|2322_113256-113349_1-24
- gnl|BL_ORD_ID|2257_39133-39286_1-24
- gnl|BL_ORD_ID|2257_39133+39286_131-154
- gnl|BL_ORD_ID|2181_35526+35635_87-110
- gnl|BL_ORD_ID|2181_35526-35635_1-24
- gnl|BL_ORD_ID|2160_104464+104539_53-76
- gnl|BL_ORD_ID|2070_111235-111402_1-24
- gnl|BL_ORD_ID|2070_111235+111402_145-168
- gnl|BL_ORD_ID|1990_84913+85066_131-154
- gnl|BL_ORD_ID|1986_130662+130813_129-152
- gnl|BL_ORD_ID|1986_130662-130813_1-24
- gnl|BL_ORD_ID|1974_15518-15671_1-24
- gnl|BL_ORD_ID|1974_15518+15671_131-154
- gnl|BL_ORD_ID|1963_3914+4067_131-154
- gnl|BL_ORD_ID|1963_3914-4067_1-24
- gnl|BL_ORD_ID|1960_66735+66888_131-154
- gnl|BL_ORD_ID|1960_66735-66888_1-24
- gnl|BL_ORD_ID|1931_29321+29474_131-154
- gnl|BL_ORD_ID|1931_29321-29474_1-24
- gnl|BL_ORD_ID|1904_135734+135886_130-153
- gnl|BL_ORD_ID|1904_135734-135886_1-24
- gnl|BL_ORD_ID|1896_86597+86743_124-147
- gnl|BL_ORD_ID|1896_86597-86743_1-24
- gnl|BL_ORD_ID|1823_139635+139759_102-125
- gnl|BL_ORD_ID|1823_139635-139759_1-24
- gnl|BL_ORD_ID|1741_117896-118049_1-24
- gnl|BL_ORD_ID|1741_117896+118049_131-154
- gnl|BL_ORD_ID|1732_2702-2855_1-24
- gnl|BL_ORD_ID|1732_2702+2855_131-154
- gnl|BL_ORD_ID|1678_108063-108238_1-24
- gnl|BL_ORD_ID|1678_108063+108238_153-176
- gnl|BL_ORD_ID|1656_100208+100361_131-154
- gnl|BL_ORD_ID|1656_100208-100361_1-24
- gnl|BL_ORD_ID|1588_134215-134368_1-24
- gnl|BL_ORD_ID|1588_134215+134368_131-154
- gnl|BL_ORD_ID|1586_136609-136762_1-24
- gnl|BL_ORD_ID|1586_136609+136762_131-154
- gnl|BL_ORD_ID|1509_132941-133092_1-24
- gnl|BL_ORD_ID|1509_132941+133092_129-152
- gnl|BL_ORD_ID|1407_25795+25870_53-76
- gnl|BL_ORD_ID|1328_86147-86277_1-24
- gnl|BL_ORD_ID|1328_86147+86277_108-131
- gnl|BL_ORD_ID|1324_43958+44111_131-154
- gnl|BL_ORD_ID|1324_43958-44111_1-24
- gnl|BL_ORD_ID|1206_7667+7820_131-154
- gnl|BL_ORD_ID|1206_7667-7820_1-24
- gnl|BL_ORD_ID|1162_51609-51774_1-24
- gnl|BL_ORD_ID|1162_51609+51774_143-166
- gnl|BL_ORD_ID|1105_34204-34357_1-24
- gnl|BL_ORD_ID|1105_34204+34357_131-154
- gnl|BL_ORD_ID|1086_96815-96968_1-24
- gnl|BL_ORD_ID|1086_96815+96968_131-154
- gnl|BL_ORD_ID|989_94305-94458_1-24
- gnl|BL_ORD_ID|989_94305+94458_131-154
- gnl|BL_ORD_ID|975_106182+106335_131-154
- gnl|BL_ORD_ID|975_106182-106335_1-24
- gnl|BL_ORD_ID|904_56745+56872_105-128
- gnl|BL_ORD_ID|904_56745-56872_1-24
- gnl|BL_ORD_ID|856_4719+4872_131-154
- gnl|BL_ORD_ID|856_4719-4872_1-24
- gnl|BL_ORD_ID|849_135483+135666_161-184
- gnl|BL_ORD_ID|849_135538+135666_106-129
- gnl|BL_ORD_ID|815_98860+99013_131-154
- gnl|BL_ORD_ID|815_98860-99013_1-24
- gnl|BL_ORD_ID|732_95724-95877_1-24
- gnl|BL_ORD_ID|732_95724+95877_131-154
- gnl|BL_ORD_ID|622_3923+4047_102-125
- gnl|BL_ORD_ID|622_3923-4047_1-24
- gnl|BL_ORD_ID|386_127691+127844_131-154
- gnl|BL_ORD_ID|386_127691-127844_1-24
- gnl|BL_ORD_ID|329_15685+15838_131-154
- gnl|BL_ORD_ID|329_15685-15838_1-24
- gnl|BL_ORD_ID|325_114657+114810_131-154
- gnl|BL_ORD_ID|325_114657-114810_1-24
- gnl|BL_ORD_ID|197_99955-100108_1-24
- gnl|BL_ORD_ID|197_99955+100108_131-154
- gnl|BL_ORD_ID|23_27979+28132_131-154
- gnl|BL_ORD_ID|23_27979-28132_1-24
- gnl|BL_ORD_ID|3475_89474-89627_1-24
- gnl|BL_ORD_ID|3475_89474+89627_131-154
- gnl|BL_ORD_ID|3090_8101-8254_1-24
- gnl|BL_ORD_ID|3090_8101+8254_131-154
- gnl|BL_ORD_ID|2978_76410-76515_1-24
- gnl|BL_ORD_ID|2978_76410+76515_83-106
- gnl|BL_ORD_ID|2761_35709+35862_131-154
- gnl|BL_ORD_ID|2758_91006-91159_1-24
- gnl|BL_ORD_ID|2758_91006+91159_131-154
- gnl|BL_ORD_ID|2472_80126+80279_131-154
- gnl|BL_ORD_ID|2472_80126-80279_1-24
- gnl|BL_ORD_ID|2223_169884-170041_1-24
- gnl|BL_ORD_ID|2223_169884+170041_135-158
- gnl|BL_ORD_ID|2078_59418+59549_109-132
- gnl|BL_ORD_ID|2078_59418-59549_1-24
- gnl|BL_ORD_ID|1948_32606+32725_97-120
- gnl|BL_ORD_ID|1948_32606-32725_1-24
- gnl|BL_ORD_ID|1947_3198+3317_97-120
- gnl|BL_ORD_ID|1947_3198-3317_1-24
- gnl|BL_ORD_ID|1387_141213+141384_149-172
- gnl|BL_ORD_ID|1387_141213-141384_1-24
- gnl|BL_ORD_ID|1033_15125+15278_131-154
- gnl|BL_ORD_ID|825_57386+57539_131-154
- gnl|BL_ORD_ID|825_57386-57539_1-24
- gnl|BL_ORD_ID|764_83441+83594_131-154
- gnl|BL_ORD_ID|752_34531+34684_131-154
- gnl|BL_ORD_ID|558_13224+13377_131-154
- gnl|BL_ORD_ID|558_13224-13377_1-24
- gnl|BL_ORD_ID|252_9865-9996_1-24
- gnl|BL_ORD_ID|252_9865+9996_109-132
- gnl|BL_ORD_ID|129_95767-95882_1-24
- gnl|BL_ORD_ID|129_95767+95882_93-116
- gnl|BL_ORD_ID|123_42424+42577_131-154
- gnl|BL_ORD_ID|122_115043-115192_1-24
- gnl|BL_ORD_ID|122_115043+115192_127-150
- gnl|BL_ORD_ID|106_47554+47703_127-150
- gnl|BL_ORD_ID|106_47554-47703_1-24
- gnl|BL_ORD_ID|50_89458-89611_1-24
- gnl|BL_ORD_ID|50_89458+89611_131-154
- gnl|BL_ORD_ID|24_91415-91568_1-24
- gnl|BL_ORD_ID|24_91415+91568_131-154