IGR sequence:igr1051#chr3#x1=4116016#l=6048
Mature miRNA sequence:ACUUAUAUUAUGAAACGAAGGGA
encoded miRNA:MIR90a
Precursor location:2494 - 2670 (negative strand)
precursor length:177 (60 basepairs)
MIR position:155 - 177 (2494 - 2516)
MIR length:23 (20 paired bases)
miRNA location TIGR v3:chr3:4118509<4118685
miRNA location TIGR v5:chr3:4118509<4118685
Folding energy:-36.22
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UUUUUGUUUU ACAAUAUAAG UUGUUUUCAA GUUUUUAUGC AAAUUAUAUA AUAUUUUAAU    60
(((((((((( (-(((((((( (((((((--( (-------(( (,<<<<<<<< <<<<-<<<<< 

                                                                  
AAUUUAUGAU UAAUUAUAUU AUGUAGUCUC UUUUCUAAUU GGUUAAACUU UUUAAAAAUA   120
________>> >>>-->>>>> >>>>>>>,,, ,,,,,,,,,, <<<<<<<<-- <<<<____>> 

                                     ****** ********** *******
AAUGUUCUUA AUCUACGUGC UUUUAUCUAA AACAACUUAU AUUAUGAAAC GAAGGGA  177
>>->>-->>> >>>,,,,))) ------)))) )))))))))) )))-)))))) )))))::

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs