IGR sequence: | igr1051#chr3#x1=4116016#l=6048 |
---|---|
Mature miRNA sequence: | ACUUAUAUUAUGAAACGAAGGGA |
encoded miRNA: | MIR90a |
Precursor location: | 2494 - 2670 (negative strand) |
precursor length: | 177 (60 basepairs) |
MIR position: | 155 - 177 (2494 - 2516) |
MIR length: | 23 (20 paired bases) |
miRNA location TIGR v3: | chr3:4118509<4118685 |
miRNA location TIGR v5: | chr3:4118509<4118685 |
Folding energy: | -36.22 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UUUUUGUUUU ACAAUAUAAG UUGUUUUCAA GUUUUUAUGC AAAUUAUAUA AUAUUUUAAU 60 (((((((((( (-(((((((( (((((((--( (-------(( (,<<<<<<<< <<<<-<<<<< AAUUUAUGAU UAAUUAUAUU AUGUAGUCUC UUUUCUAAUU GGUUAAACUU UUUAAAAAUA 120 ________>> >>>-->>>>> >>>>>>>,,, ,,,,,,,,,, <<<<<<<<-- <<<<____>> ****** ********** ******* AAUGUUCUUA AUCUACGUGC UUUUAUCUAA AACAACUUAU AUUAUGAAAC GAAGGGA 177 >>->>-->>> >>>,,,,))) ------)))) )))))))))) )))-)))))) )))))::
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|2089_60253+60400_1-23
- gnl|BL_ORD_ID|2089_60253-60400_126-148
- gnl|BL_ORD_ID|931_10411+10558_1-23
- gnl|BL_ORD_ID|931_10411-10558_126-148
- gnl|BL_ORD_ID|3000_138447-138582_114-136
- gnl|BL_ORD_ID|3000_138447+138582_1-23
- gnl|BL_ORD_ID|3492_35857-35974_96-118
- gnl|BL_ORD_ID|3492_35857+35974_1-23
- gnl|BL_ORD_ID|3475_24243-24385_121-143
- gnl|BL_ORD_ID|3475_24243+24385_1-23
- gnl|BL_ORD_ID|3407_106626-106872_225-247
- gnl|BL_ORD_ID|3354_5862-5991_108-130
- gnl|BL_ORD_ID|3354_5862+5991_1-23
- gnl|BL_ORD_ID|3290_72968-73115_126-148
- gnl|BL_ORD_ID|3237_77992+78212_1-23
- gnl|BL_ORD_ID|3237_77992-78212_199-221
- gnl|BL_ORD_ID|3059_89336+89491_1-23
- gnl|BL_ORD_ID|3059_89336-89491_134-156
- gnl|BL_ORD_ID|2880_11285-11402_96-118
- gnl|BL_ORD_ID|2880_11285+11402_1-23
- gnl|BL_ORD_ID|2791_40460-40581_100-122
- gnl|BL_ORD_ID|2791_40460+40581_1-23
- gnl|BL_ORD_ID|2764_3094-3241_126-148
- gnl|BL_ORD_ID|2764_3094+3241_1-23
- gnl|BL_ORD_ID|2376_12718+12867_1-23
- gnl|BL_ORD_ID|2376_12718-12867_128-150
- gnl|BL_ORD_ID|2161_66061+66206_1-23
- gnl|BL_ORD_ID|2161_66061-66206_124-146
- gnl|BL_ORD_ID|2027_55763-55918_134-156
- gnl|BL_ORD_ID|2027_55763+55918_1-23
- gnl|BL_ORD_ID|1778_16608-16793_164-186
- gnl|BL_ORD_ID|1778_16608+16793_1-23
- gnl|BL_ORD_ID|1573_141393-141486_72-94
- gnl|BL_ORD_ID|1573_141393+141486_1-23
- gnl|BL_ORD_ID|1548_105455-105604_128-150
- gnl|BL_ORD_ID|1548_105455+105604_1-23
- gnl|BL_ORD_ID|1497_109813+109960_1-23
- gnl|BL_ORD_ID|1497_109813-109960_126-148
- gnl|BL_ORD_ID|1249_40178-40325_126-148
- gnl|BL_ORD_ID|1249_40178+40325_1-23
- gnl|BL_ORD_ID|1199_43071+43216_1-23
- gnl|BL_ORD_ID|1199_43071-43216_124-146