IGR sequence: | igr3964#chr1#x1=18832457#l=4446 |
---|---|
Mature miRNA sequence: | CCUCCGUUUCACAAUAUAAGU |
encoded miRNA: | MIR89t |
Precursor location: | 3110 - 3320 (positive strand) |
precursor length: | 211 (69 basepairs) |
MIR position: | 1 - 21 (3110 - 3130) |
MIR length: | 21 (20 paired bases) |
miRNA location TIGR v3: | chr1:18835566>18835776 |
miRNA location TIGR v5: | chr1:19239438>19239648 |
Folding energy: | -52.50 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** * CCUCCGUUUC ACAAUAUAAG UUGUUUUAGA CCAAAUUUUU UGUUUCACAA UAUAAGUUGU 60 (((((((((( ((-((((((( (((((((((, ,,,,,,,,<< <<----<<<< <____>>>>> UUUCAAGUUU CUAUGCAAAU UAUAUAUUAC UUUAAUACUU UAUGAUUAUU UAUAUUCUAC 120 --->>>>,,, ,<<<<-<<<< <<-<<<<<<< <<<,,,,,,, [[[[[____] ]]]],,,,,[ AGUUUCUUUU AUAAUUGGCU GAACUUUUUA AAAGUAAAUA UUUUUAAUUU ACGUGCUUUU 180 [[[[--[[__ __]]--]]]] ],,,,,,,,, >>>>>->>>> >--->>>>>> ->>>>,,,,, AGCUAAAAUA AUUUAUAUCG UGAAACGGAG G 211 ,,)))))))) ))))))))-) )))))))))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3349_82795+82968_1-21
- gnl|BL_ORD_ID|3349_82795-82969_155-175
- gnl|BL_ORD_ID|2836_99334+99476_1-21
- gnl|BL_ORD_ID|2836_99334-99476_123-143
- gnl|BL_ORD_ID|2181_35531+35630_1-21
- gnl|BL_ORD_ID|2181_35531-35630_80-100
- gnl|BL_ORD_ID|1974_65732-65875_124-144
- gnl|BL_ORD_ID|1974_65732+65875_1-21
- gnl|BL_ORD_ID|1593_29282-29425_124-144
- gnl|BL_ORD_ID|1593_29282+29425_1-21
- gnl|BL_ORD_ID|1593_170070-170213_124-144
- gnl|BL_ORD_ID|1593_170070+170213_1-21
- gnl|BL_ORD_ID|1589_93551-93694_124-144
- gnl|BL_ORD_ID|1589_93551+93694_1-21
- gnl|BL_ORD_ID|1261_81096+81216_1-21
- gnl|BL_ORD_ID|1261_81096-81217_102-122
- gnl|BL_ORD_ID|1206_7672+7815_1-21
- gnl|BL_ORD_ID|1206_7672-7815_124-144
- gnl|BL_ORD_ID|1086_97073-97216_124-144
- gnl|BL_ORD_ID|1086_97073+97216_1-21
- gnl|BL_ORD_ID|989_150242-150327_66-86
- gnl|BL_ORD_ID|3467_19358-19506_129-149
- gnl|BL_ORD_ID|3467_19358+19506_1-21
- gnl|BL_ORD_ID|2399_80156-80303_128-148
- gnl|BL_ORD_ID|24_91673-91816_124-144
- gnl|BL_ORD_ID|24_91673+91816_1-21
- gnl|BL_ORD_ID|3579_107428-107571_124-144
- gnl|BL_ORD_ID|3579_107428+107571_1-21
- gnl|BL_ORD_ID|487_128900-129022_103-123
- gnl|BL_ORD_ID|487_128900+129022_1-21
- gnl|BL_ORD_ID|391_7171-7320_130-150
- gnl|BL_ORD_ID|391_7171+7320_1-21
- gnl|BL_ORD_ID|387_51203-51352_130-150
- gnl|BL_ORD_ID|387_51203+51352_1-21
- gnl|BL_ORD_ID|3462_94739+94859_1-21
- gnl|BL_ORD_ID|3462_94739-94859_101-121
- gnl|BL_ORD_ID|3125_89065-89180_96-116
- gnl|BL_ORD_ID|3125_89065+89180_1-21