IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:CCUCCGUUUCACAAUAUAAGU
encoded miRNA:MIR89t
Precursor location:3110 - 3320 (positive strand)
precursor length:211 (69 basepairs)
MIR position:1 - 21 (3110 - 3130)
MIR length:21 (20 paired bases)
miRNA location TIGR v3:chr1:18835566>18835776
miRNA location TIGR v5:chr1:19239438>19239648
Folding energy:-52.50
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** *                                           
CCUCCGUUUC ACAAUAUAAG UUGUUUUAGA CCAAAUUUUU UGUUUCACAA UAUAAGUUGU    60
(((((((((( ((-((((((( (((((((((, ,,,,,,,,<< <<----<<<< <____>>>>> 

                                                                  
UUUCAAGUUU CUAUGCAAAU UAUAUAUUAC UUUAAUACUU UAUGAUUAUU UAUAUUCUAC   120
--->>>>,,, ,<<<<-<<<< <<-<<<<<<< <<<,,,,,,, [[[[[____] ]]]],,,,,[ 

                                                                  
AGUUUCUUUU AUAAUUGGCU GAACUUUUUA AAAGUAAAUA UUUUUAAUUU ACGUGCUUUU   180
[[[[--[[__ __]]--]]]] ],,,,,,,,, >>>>>->>>> >--->>>>>> ->>>>,,,,, 

                                  
AGCUAAAAUA AUUUAUAUCG UGAAACGGAG G  211
,,)))))))) ))))))))-) )))))))))) )

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs