IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:ACUUAUAUUGUGAAACGGAGGGA
encoded miRNA:MIR89q
Precursor location:3108 - 3322 (negative strand)
precursor length:215 (71 basepairs)
MIR position:193 - 215 (3108 - 3130)
MIR length:23 (22 paired bases)
miRNA location TIGR v3:chr1:18835564<18835778
miRNA location TIGR v5:chr1:19239436<19239650
Folding energy:-52.24
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UCCCUCCGUU UCACGAUAUA AAUUAUUUUA GCUAAAAGCA CGUAAAUUAA AAAUAUUUAC    60
(((((((((( (((((((((( (-((-((((( ((((((,,,, ,<<<<<<<<, ,,,[[[[[[- 

                                                                  
UUUUAAAAAG UUCAGCCAAU UAUAAAAGAA ACUGUAGAAU AUAAAUAAUC AUAAAGUAUU   120
[[[[[---[[ [[[_______ _______]-] ]]]-]]]]]- -]]]]]],,, ,,,,,[[[[[ 

                                                                  
AAAGUAAUAU AUAAUUUGCA UAGAAACUUG AAAACAACUU AUAUUGUGAA ACAAAAAAUU   180
[___]]]]]] ,>>>>>>>>, ,,,,,,,[[[ ---[[[[___ ___]]]]--- -]]],,,,)) 

             ******** ********** *****
UGGUCUAAAA CAACUUAUAU UGUGAAACGG AGGGA  215
)))-)))))) -))-)))))) )))))))))) )))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs