IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:UCCCUCCGUUUCACAAUAUAAGU
encoded miRNA:MIR89p
Precursor location:3108 - 3322 (positive strand)
precursor length:215 (71 basepairs)
MIR position:1 - 23 (3108 - 3130)
MIR length:23 (22 paired bases)
miRNA location TIGR v3:chr1:18835564>18835778
miRNA location TIGR v5:chr1:19239436>19239650
Folding energy:-57.70
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** ***                                         
UCCCUCCGUU UCACAAUAUA AGUUGUUUUA GACCAAAUUU UUUGUUUCAC AAUAUAAGUU    60
(((((((((( ((((-((((( (((((((((( (,,,,,,,,, <<<<----<< <<<____>>> 

                                                                  
GUUUUCAAGU UUCUAUGCAA AUUAUAUAUU ACUUUAAUAC UUUAUGAUUA UUUAUAUUCU   120
>>--->>>>, ,,,<<<<-<< <<<<-<<<<< <<<<<,,,,, ,,[[[[[___ _]]]]],,,, 

                                                                  
ACAGUUUCUU UUAUAAUUGG CUGAACUUUU UAAAAGUAAA UAUUUUUAAU UUACGUGCUU   180
,[[[[[--[[ ____]]--]] ]]],,,,,,, ,,>>>>>->> >>>--->>>> >>->>>>,,, 

                                      
UUAGCUAAAA UAAUUUAUAU CGUGAAACGG AGGGA  215
,,,,)))))) )))))))))) -))))))))) )))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs