IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:AACUUAUAUUGUGAAACGGAGGGAG
encoded miRNA:MIR89o
Precursor location:3107 - 3323 (negative strand)
precursor length:217 (72 basepairs)
MIR position:193 - 217 (3107 - 3131)
MIR length:25 (24 paired bases)
miRNA location TIGR v3:chr1:18835563<18835779
miRNA location TIGR v5:chr1:19239435<19239651
Folding energy:-54.84
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
CUCCCUCCGU UUCACGAUAU AAAUUAUUUU AGCUAAAAGC ACGUAAAUUA AAAAUAUUUA    60
(((((((((( (((((((((( ((-((-(((( (((((((,,, ,,<<<<<<<< ,,,,[[[[[[ 

                                                                  
CUUUUAAAAA GUUCAGCCAA UUAUAAAAGA AACUGUAGAA UAUAAAUAAU CAUAAAGUAU   120
-[[[[[---[ [[[[______ ________]- ]]]]-]]]]] --]]]]]],, ,,,,,,[[[[ 

                                                                  
UAAAGUAAUA UAUAAUUUGC AUAGAAACUU GAAAACAACU UAUAUUGUGA AACAAAAAAU   180
[[___]]]]] ],>>>>>>>> ,,,,,,,,[[ [---[[[[__ ____]]]]-- --]]],,,,) 

             ******** ********** *******
UUGGUCUAAA ACAACUUAUA UUGUGAAACG GAGGGAG  217
))))-))))) )-))-))))) )))))))))) )))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs