IGR sequence: | igr3964#chr1#x1=18832457#l=4446 |
---|---|
Mature miRNA sequence: | ACUCCCUCCGUUUCACAAUAUAAGU |
encoded miRNA: | MIR89l |
Precursor location: | 3106 - 3324 (positive strand) |
precursor length: | 219 (73 basepairs) |
MIR position: | 1 - 25 (3106 - 3130) |
MIR length: | 25 (24 paired bases) |
miRNA location TIGR v3: | chr1:18835562>18835780 |
miRNA location TIGR v5: | chr1:19239434>19239652 |
Folding energy: | -62.00 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ***** ACUCCCUCCG UUUCACAAUA UAAGUUGUUU UAGACCAAAU UUUUUGUUUC ACAAUAUAAG 60 (((((((((( ((((((-((( (((((((((( (((,,,,,,, ,,<<<<---- <<<<<____> UUGUUUUCAA GUUUCUAUGC AAAUUAUAUA UUACUUUAAU ACUUUAUGAU UAUUUAUAUU 120 >>>>--->>> >,,,,<<<<- <<<<<<-<<< <<<<<<<,,, ,,,,[[[[[_ ___]]]]],, CUACAGUUUC UUUUAUAAUU GGCUGAACUU UUUAAAAGUA AAUAUUUUUA AUUUACGUGC 180 ,,,[[[[[-- [[____]]-- ]]]]],,,,, ,,,,>>>>>- >>>>>--->> >>>>->>>>, UUUUAGCUAA AAUAAUUUAU AUCGUGAAAC GGAGGGAGU 219 ,,,,,,)))) )))))))))) ))-))))))) )))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|618_132288-132395_84-108
- gnl|BL_ORD_ID|618_132288+132395_1-25
- gnl|BL_ORD_ID|3537_118843-119003_137-161
- gnl|BL_ORD_ID|3537_118843+119003_1-25
- gnl|BL_ORD_ID|792_41215-41336_98-122
- gnl|BL_ORD_ID|792_41215+41336_1-25
- gnl|BL_ORD_ID|738_137192-137313_98-122
- gnl|BL_ORD_ID|738_137192+137313_1-25
- gnl|BL_ORD_ID|738_14597+14748_1-25
- gnl|BL_ORD_ID|738_14597-14748_128-152
- gnl|BL_ORD_ID|3549_139543+139694_1-25
- gnl|BL_ORD_ID|3549_139543-139694_128-152
- gnl|BL_ORD_ID|3549_107295-107497_179-203
- gnl|BL_ORD_ID|3549_107295+107497_1-25
- gnl|BL_ORD_ID|3540_103740-104005_242-266
- gnl|BL_ORD_ID|3540_103740+104005_1-25
- gnl|BL_ORD_ID|3518_32093+32243_1-25
- gnl|BL_ORD_ID|3518_32093-32243_127-151
- gnl|BL_ORD_ID|3474_82137+82288_1-25
- gnl|BL_ORD_ID|3474_82137-82288_128-152
- gnl|BL_ORD_ID|3460_27510-27661_128-152
- gnl|BL_ORD_ID|3460_27510+27661_1-25
- gnl|BL_ORD_ID|3455_84875+85025_1-25
- gnl|BL_ORD_ID|3455_84875-85025_127-151
- gnl|BL_ORD_ID|3453_35117-35265_125-149
- gnl|BL_ORD_ID|3453_35117+35265_1-25
- gnl|BL_ORD_ID|3379_58502+58653_1-25
- gnl|BL_ORD_ID|3379_58502-58653_128-152
- gnl|BL_ORD_ID|3349_73468-73619_128-152
- gnl|BL_ORD_ID|3349_73468+73619_1-25
- gnl|BL_ORD_ID|3349_51949+52085_1-25
- gnl|BL_ORD_ID|3349_51949-52085_113-137
- gnl|BL_ORD_ID|3349_87496-87605_86-110
- gnl|BL_ORD_ID|3349_87496+87605_1-25
- gnl|BL_ORD_ID|3346_2536+2695_1-25
- gnl|BL_ORD_ID|3346_2536-2695_136-160
- gnl|BL_ORD_ID|3332_126632+126791_1-25
- gnl|BL_ORD_ID|3332_126632-126791_136-160
- gnl|BL_ORD_ID|3319_74584+74739_1-25
- gnl|BL_ORD_ID|3319_74584-74739_132-156
- gnl|BL_ORD_ID|3319_92251-92388_114-138
- gnl|BL_ORD_ID|3319_92251+92387_1-25
- gnl|BL_ORD_ID|3242_63870-64045_152-176
- gnl|BL_ORD_ID|3224_110156+110307_1-25
- gnl|BL_ORD_ID|3224_110156-110307_128-152
- gnl|BL_ORD_ID|3224_112124-112275_128-152
- gnl|BL_ORD_ID|3224_112124+112275_1-25
- gnl|BL_ORD_ID|3140_70687-70831_121-145
- gnl|BL_ORD_ID|3140_70687+70831_1-25
- gnl|BL_ORD_ID|3097_53753-53863_87-111
- gnl|BL_ORD_ID|3097_53753+53863_1-25
- gnl|BL_ORD_ID|3023_1790+1938_1-25
- gnl|BL_ORD_ID|3023_1790-1938_125-149
- gnl|BL_ORD_ID|3008_36405+36556_1-25
- gnl|BL_ORD_ID|3008_36405-36556_128-152
- gnl|BL_ORD_ID|2997_10624+10749_1-25
- gnl|BL_ORD_ID|2997_10624-10749_102-126
- gnl|BL_ORD_ID|2943_47124+47251_1-25
- gnl|BL_ORD_ID|2943_47124-47251_104-128
- gnl|BL_ORD_ID|2932_34798-34908_87-111
- gnl|BL_ORD_ID|2932_34798+34908_1-25
- gnl|BL_ORD_ID|2895_39187-39338_128-152
- gnl|BL_ORD_ID|2895_39187+39338_1-25
- gnl|BL_ORD_ID|2891_107987+108136_1-25
- gnl|BL_ORD_ID|2891_107987-108136_126-150
- gnl|BL_ORD_ID|2873_79300+79449_1-25
- gnl|BL_ORD_ID|2873_79300-79449_126-150
- gnl|BL_ORD_ID|2836_99456-99606_127-151
- gnl|BL_ORD_ID|2836_99456+99606_1-25
- gnl|BL_ORD_ID|2812_31208-31335_104-128
- gnl|BL_ORD_ID|2812_31208+31335_1-25
- gnl|BL_ORD_ID|2810_23069+23220_1-25
- gnl|BL_ORD_ID|2810_23069-23220_128-152
- gnl|BL_ORD_ID|2773_42285+42436_1-25
- gnl|BL_ORD_ID|2773_42285-42436_128-152
- gnl|BL_ORD_ID|2773_5935-6137_179-203
- gnl|BL_ORD_ID|2773_5935+6137_1-25
- gnl|BL_ORD_ID|2629_149252-149375_100-124
- gnl|BL_ORD_ID|2629_149252+149375_1-25
- gnl|BL_ORD_ID|2621_2324+2451_1-25
- gnl|BL_ORD_ID|2621_2324-2451_104-128
- gnl|BL_ORD_ID|2578_5695-5850_132-156
- gnl|BL_ORD_ID|2578_5695+5850_1-25
- gnl|BL_ORD_ID|2562_55005+55156_1-25
- gnl|BL_ORD_ID|2562_55005-55156_128-152
- gnl|BL_ORD_ID|2562_117846+117997_1-25
- gnl|BL_ORD_ID|2562_117846-117997_128-152
- gnl|BL_ORD_ID|2531_32548-32699_128-152
- gnl|BL_ORD_ID|2531_32548+32699_1-25
- gnl|BL_ORD_ID|2531_3523-3670_124-148
- gnl|BL_ORD_ID|2531_3523+3669_1-25
- gnl|BL_ORD_ID|2511_100931+101059_1-25
- gnl|BL_ORD_ID|2511_100931-101059_105-129
- gnl|BL_ORD_ID|2457_48425+48576_1-25
- gnl|BL_ORD_ID|2457_48425-48576_128-152
- gnl|BL_ORD_ID|2415_44044-44195_128-152
- gnl|BL_ORD_ID|2415_44044+44195_1-25
- gnl|BL_ORD_ID|2322_113324-113415_68-92
- gnl|BL_ORD_ID|2322_113324+113415_1-25
- gnl|BL_ORD_ID|2257_39264+39415_1-25
- gnl|BL_ORD_ID|2257_39264-39415_128-152
- gnl|BL_ORD_ID|2181_35610-35717_84-108
- gnl|BL_ORD_ID|2181_35610+35717_1-25
- gnl|BL_ORD_ID|2160_104514-104587_50-74
- gnl|BL_ORD_ID|2160_53846+53975_1-25
- gnl|BL_ORD_ID|2160_53846-53976_107-131
- gnl|BL_ORD_ID|2160_53078-53251_150-174
- gnl|BL_ORD_ID|2083_29586-29739_130-154
- gnl|BL_ORD_ID|2083_29586+29739_1-25
- gnl|BL_ORD_ID|2070_111380+111545_1-25
- gnl|BL_ORD_ID|2070_111380-111545_142-166
- gnl|BL_ORD_ID|2038_110109+110260_1-25
- gnl|BL_ORD_ID|2038_110109-110260_128-152
- gnl|BL_ORD_ID|1990_19705-19850_122-146
- gnl|BL_ORD_ID|1990_19705+19850_1-25
- gnl|BL_ORD_ID|1986_130788-130937_126-150
- gnl|BL_ORD_ID|1986_130788+130937_1-25
- gnl|BL_ORD_ID|1986_100535-100688_130-154
- gnl|BL_ORD_ID|1986_100535+100688_1-25
- gnl|BL_ORD_ID|1974_15649+15800_1-25
- gnl|BL_ORD_ID|1974_15649-15800_128-152
- gnl|BL_ORD_ID|1974_65605+65756_1-25
- gnl|BL_ORD_ID|1974_65605-65756_128-152
- gnl|BL_ORD_ID|1963_4042-4193_128-152
- gnl|BL_ORD_ID|1963_4042+4193_1-25
- gnl|BL_ORD_ID|1963_32795+32944_1-25
- gnl|BL_ORD_ID|1963_32795-32944_126-150
- gnl|BL_ORD_ID|1963_3915+4066_1-25
- gnl|BL_ORD_ID|1963_3915-4066_128-152
- gnl|BL_ORD_ID|1960_66863-67014_128-152
- gnl|BL_ORD_ID|1960_66863+67014_1-25
- gnl|BL_ORD_ID|1960_66736+66887_1-25
- gnl|BL_ORD_ID|1960_66736-66887_128-152
- gnl|BL_ORD_ID|1931_29449-29600_128-152
- gnl|BL_ORD_ID|1931_29449+29600_1-25
- gnl|BL_ORD_ID|1911_34557-34708_128-152
- gnl|BL_ORD_ID|1911_34557+34708_1-25
- gnl|BL_ORD_ID|1904_135861-136011_127-151
- gnl|BL_ORD_ID|1904_135861+136011_1-25
- gnl|BL_ORD_ID|1904_157577-157705_105-129
- gnl|BL_ORD_ID|1904_157577+157705_1-25
- gnl|BL_ORD_ID|1896_86718-86862_121-145
- gnl|BL_ORD_ID|1896_86718+86862_1-25
- gnl|BL_ORD_ID|1823_139734-139856_99-123
- gnl|BL_ORD_ID|1823_139734+139856_1-25
- gnl|BL_ORD_ID|1771_14959+15088_1-25
- gnl|BL_ORD_ID|1771_14959-15088_106-130
- gnl|BL_ORD_ID|1741_118027+118178_1-25
- gnl|BL_ORD_ID|1741_118027-118178_128-152
- gnl|BL_ORD_ID|1732_2833+2984_1-25
- gnl|BL_ORD_ID|1732_2833-2984_128-152
- gnl|BL_ORD_ID|1678_108216+108389_1-25
- gnl|BL_ORD_ID|1678_108216-108389_150-174
- gnl|BL_ORD_ID|1678_10693-10844_128-152
- gnl|BL_ORD_ID|1678_10693+10844_1-25
- gnl|BL_ORD_ID|1660_43710+43794_1-25
- gnl|BL_ORD_ID|1660_43710-43794_61-85
- gnl|BL_ORD_ID|1659_56431-56582_128-152
- gnl|BL_ORD_ID|1659_139701+139852_1-25
- gnl|BL_ORD_ID|1659_139701-139852_128-152
- gnl|BL_ORD_ID|1656_100336-100487_128-152
- gnl|BL_ORD_ID|1656_100336+100487_1-25
- gnl|BL_ORD_ID|1593_29155+29306_1-25
- gnl|BL_ORD_ID|1593_29155-29306_128-152
- gnl|BL_ORD_ID|1593_169943+170094_1-25
- gnl|BL_ORD_ID|1593_169943-170094_128-152
- gnl|BL_ORD_ID|1588_134346+134497_1-25
- gnl|BL_ORD_ID|1588_134346-134497_128-152
- gnl|BL_ORD_ID|1586_136740+136891_1-25
- gnl|BL_ORD_ID|1586_136740-136891_128-152
- gnl|BL_ORD_ID|1558_16084+16235_1-25
- gnl|BL_ORD_ID|1558_16084-16235_128-152
- gnl|BL_ORD_ID|1509_133070+133219_1-25
- gnl|BL_ORD_ID|1509_133070-133219_126-150
- gnl|BL_ORD_ID|1509_97675+97826_1-25
- gnl|BL_ORD_ID|1509_97675-97826_128-152
- gnl|BL_ORD_ID|1407_25845-25918_50-74
- gnl|BL_ORD_ID|1396_51729-51880_128-152
- gnl|BL_ORD_ID|1396_51729+51880_1-25
- gnl|BL_ORD_ID|1396_61607+61760_1-25
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- gnl|BL_ORD_ID|1328_86255+86383_1-25
- gnl|BL_ORD_ID|1328_86255-86383_105-129
- gnl|BL_ORD_ID|1206_7795-7946_128-152
- gnl|BL_ORD_ID|1206_7795+7946_1-25
- gnl|BL_ORD_ID|1162_61390+61539_1-25
- gnl|BL_ORD_ID|1162_61390-61539_126-150
- gnl|BL_ORD_ID|1105_34335+34486_1-25
- gnl|BL_ORD_ID|1105_34335-34486_128-152
- gnl|BL_ORD_ID|1086_96946+97097_1-25
- gnl|BL_ORD_ID|1086_96946-97097_128-152
- gnl|BL_ORD_ID|1068_100211-100364_130-154
- gnl|BL_ORD_ID|1068_100211+100364_1-25
- gnl|BL_ORD_ID|1064_154009-154154_122-146
- gnl|BL_ORD_ID|1064_154009+154154_1-25
- gnl|BL_ORD_ID|1006_23899+24022_1-25
- gnl|BL_ORD_ID|1006_23899-24022_100-124
- gnl|BL_ORD_ID|989_94436+94587_1-25
- gnl|BL_ORD_ID|989_94436-94587_128-152
- gnl|BL_ORD_ID|975_106310-106461_128-152
- gnl|BL_ORD_ID|975_106310+106461_1-25
- gnl|BL_ORD_ID|933_86928-87079_128-152
- gnl|BL_ORD_ID|933_86928+87079_1-25
- gnl|BL_ORD_ID|904_56847-56972_102-126
- gnl|BL_ORD_ID|904_56847+56972_1-25
- gnl|BL_ORD_ID|856_4847-4998_128-152
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- gnl|BL_ORD_ID|838_109895+110046_1-25
- gnl|BL_ORD_ID|838_109895-110046_128-152
- gnl|BL_ORD_ID|815_98988-99139_128-152
- gnl|BL_ORD_ID|815_98988+99139_1-25
- gnl|BL_ORD_ID|732_95855+96006_1-25
- gnl|BL_ORD_ID|732_95855-96006_128-152
- gnl|BL_ORD_ID|622_4022-4144_99-123
- gnl|BL_ORD_ID|622_4022+4144_1-25
- gnl|BL_ORD_ID|515_104618+104753_1-25
- gnl|BL_ORD_ID|515_104618-104753_112-136
- gnl|BL_ORD_ID|409_93962+94097_1-25
- gnl|BL_ORD_ID|409_93962-94097_112-136
- gnl|BL_ORD_ID|409_131700-131851_128-152
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- gnl|BL_ORD_ID|386_127819-127970_128-152
- gnl|BL_ORD_ID|386_127819+127970_1-25
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- gnl|BL_ORD_ID|357_67709+67860_1-25
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- gnl|BL_ORD_ID|353_40008-40122_91-115
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- gnl|BL_ORD_ID|2761_62193+62344_1-25
- gnl|BL_ORD_ID|2761_62193-62344_128-152
- gnl|BL_ORD_ID|2758_64790+64931_1-25
- gnl|BL_ORD_ID|2758_64790-64931_118-142
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- gnl|BL_ORD_ID|123_110096-110247_128-152
- gnl|BL_ORD_ID|123_110096+110247_1-25
- gnl|BL_ORD_ID|50_24233-24379_123-147
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- gnl|BL_ORD_ID|3579_107301-107452_128-152
- gnl|BL_ORD_ID|3334_136131+136273_1-25
- gnl|BL_ORD_ID|3334_136131-136273_119-143
- gnl|BL_ORD_ID|2691_52266-52417_128-152
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- gnl|BL_ORD_ID|613_135568+135719_1-25
- gnl|BL_ORD_ID|613_135568-135719_128-152
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- gnl|BL_ORD_ID|3237_77990-78213_200-224
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- gnl|BL_ORD_ID|3125_88966-89089_100-124
- gnl|BL_ORD_ID|3125_25641-25736_72-96