IGR sequence: | igr3964#chr1#x1=18832457#l=4446 |
---|---|
Mature miRNA sequence: | ACUCCCUCCGUUUCACAAUAUAAG |
encoded miRNA: | MIR89j |
Precursor location: | 3106 - 3324 (positive strand) |
precursor length: | 219 (73 basepairs) |
MIR position: | 1 - 24 (3106 - 3129) |
MIR length: | 24 (23 paired bases) |
miRNA location TIGR v3: | chr1:18835562>18835780 |
miRNA location TIGR v5: | chr1:19239434>19239652 |
Folding energy: | -62.00 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **** ACUCCCUCCG UUUCACAAUA UAAGUUGUUU UAGACCAAAU UUUUUGUUUC ACAAUAUAAG 60 (((((((((( ((((((-((( (((((((((( (((,,,,,,, ,,<<<<---- <<<<<____> UUGUUUUCAA GUUUCUAUGC AAAUUAUAUA UUACUUUAAU ACUUUAUGAU UAUUUAUAUU 120 >>>>--->>> >,,,,<<<<- <<<<<<-<<< <<<<<<<,,, ,,,,[[[[[_ ___]]]]],, CUACAGUUUC UUUUAUAAUU GGCUGAACUU UUUAAAAGUA AAUAUUUUUA AUUUACGUGC 180 ,,,[[[[[-- [[____]]-- ]]]]],,,,, ,,,,>>>>>- >>>>>--->> >>>>->>>>, UUUUAGCUAA AAUAAUUUAU AUCGUGAAAC GGAGGGAGU 219 ,,,,,,)))) )))))))))) ))-))))))) )))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3273_123124+123275_1-24
- gnl|BL_ORD_ID|3273_123124-123275_129-152
- gnl|BL_ORD_ID|3196_90489+90640_1-24
- gnl|BL_ORD_ID|3196_90489-90640_129-152
- gnl|BL_ORD_ID|3549_129007+129158_1-24
- gnl|BL_ORD_ID|3549_129007-129158_129-152
- gnl|BL_ORD_ID|3402_12167-12309_120-143
- gnl|BL_ORD_ID|3402_12167+12309_1-24
- gnl|BL_ORD_ID|3379_12527-12678_129-152
- gnl|BL_ORD_ID|3379_12527+12678_1-24
- gnl|BL_ORD_ID|3328_146396-146538_120-143
- gnl|BL_ORD_ID|3328_146396+146538_1-24
- gnl|BL_ORD_ID|2997_21628+21779_1-24
- gnl|BL_ORD_ID|2997_21628-21779_129-152
- gnl|BL_ORD_ID|2943_78906+79015_1-24
- gnl|BL_ORD_ID|2943_78906-79015_87-110
- gnl|BL_ORD_ID|2773_31749+31900_1-24
- gnl|BL_ORD_ID|2773_31749-31900_129-152
- gnl|BL_ORD_ID|2621_78213-78364_129-152
- gnl|BL_ORD_ID|2621_78213+78364_1-24
- gnl|BL_ORD_ID|1990_85044-85195_129-152
- gnl|BL_ORD_ID|1990_33938+34089_1-24
- gnl|BL_ORD_ID|1990_33938-34089_129-152
- gnl|BL_ORD_ID|1911_165444+165595_1-24
- gnl|BL_ORD_ID|1911_165444-165595_129-152
- gnl|BL_ORD_ID|1732_66939+67090_1-24
- gnl|BL_ORD_ID|1732_66939-67090_129-152
- gnl|BL_ORD_ID|1593_10735-10886_129-152
- gnl|BL_ORD_ID|1593_10735+10886_1-24
- gnl|BL_ORD_ID|1006_79999-80149_128-151
- gnl|BL_ORD_ID|1006_79999+80149_1-24
- gnl|BL_ORD_ID|386_58715+58866_1-24
- gnl|BL_ORD_ID|386_58715-58866_129-152
- gnl|BL_ORD_ID|3475_89605+89756_1-24
- gnl|BL_ORD_ID|3475_89605-89756_129-152
- gnl|BL_ORD_ID|3090_8232+8383_1-24
- gnl|BL_ORD_ID|3090_8232-8383_129-152
- gnl|BL_ORD_ID|2978_76493+76596_1-24
- gnl|BL_ORD_ID|2978_76493-76596_81-104
- gnl|BL_ORD_ID|2761_35840-35991_129-152
- gnl|BL_ORD_ID|2758_91137+91288_1-24
- gnl|BL_ORD_ID|2758_91137-91288_129-152
- gnl|BL_ORD_ID|2472_80255-80406_129-152
- gnl|BL_ORD_ID|2472_80255+80406_1-24
- gnl|BL_ORD_ID|2223_13638-13789_129-152
- gnl|BL_ORD_ID|2078_59525-59654_107-130
- gnl|BL_ORD_ID|2078_59525+59654_1-24
- gnl|BL_ORD_ID|1948_32701-32818_95-118
- gnl|BL_ORD_ID|1948_32701+32818_1-24
- gnl|BL_ORD_ID|1947_3293-3410_95-118
- gnl|BL_ORD_ID|1947_3293+3410_1-24
- gnl|BL_ORD_ID|1941_120884+121035_1-24
- gnl|BL_ORD_ID|1941_120884-121035_129-152
- gnl|BL_ORD_ID|1387_141360-141529_147-170
- gnl|BL_ORD_ID|1387_141360+141529_1-24
- gnl|BL_ORD_ID|1304_5873+6024_1-24
- gnl|BL_ORD_ID|1304_5873-6024_129-152
- gnl|BL_ORD_ID|1033_15254-15405_129-152
- gnl|BL_ORD_ID|764_83570-83721_129-152
- gnl|BL_ORD_ID|752_34662-34813_129-152
- gnl|BL_ORD_ID|558_13353-13504_129-152
- gnl|BL_ORD_ID|558_13353+13504_1-24
- gnl|BL_ORD_ID|252_9974+10103_1-24
- gnl|BL_ORD_ID|252_9974-10103_107-130
- gnl|BL_ORD_ID|252_84373+84506_1-24
- gnl|BL_ORD_ID|252_84373-84506_111-134
- gnl|BL_ORD_ID|252_84483-84616_111-134
- gnl|BL_ORD_ID|252_84483+84616_1-24
- gnl|BL_ORD_ID|129_95860+95973_1-24
- gnl|BL_ORD_ID|129_95860-95973_91-114
- gnl|BL_ORD_ID|123_42553-42704_129-152
- gnl|BL_ORD_ID|122_115170+115317_1-24
- gnl|BL_ORD_ID|122_115170-115317_125-148
- gnl|BL_ORD_ID|106_47679-47826_125-148
- gnl|BL_ORD_ID|106_47679+47826_1-24
- gnl|BL_ORD_ID|50_89589+89740_1-24
- gnl|BL_ORD_ID|50_89589-89740_129-152
- gnl|BL_ORD_ID|24_91546+91697_1-24
- gnl|BL_ORD_ID|24_91546-91697_129-152
- gnl|BL_ORD_ID|24_46757-47008_229-252
- gnl|BL_ORD_ID|24_46757+47008_1-24
- gnl|BL_ORD_ID|1349_39588+39708_1-24
- gnl|BL_ORD_ID|1349_39588-39708_98-121
- gnl|BL_ORD_ID|1117_35027-35178_129-152
- gnl|BL_ORD_ID|1117_35027+35178_1-24