IGR sequence: | igr3964#chr1#x1=18832457#l=4446 |
---|---|
Mature miRNA sequence: | ACUCCCUCCGUUUCACAAUAUAA |
encoded miRNA: | MIR89h |
Precursor location: | 3106 - 3324 (positive strand) |
precursor length: | 219 (73 basepairs) |
MIR position: | 1 - 23 (3106 - 3128) |
MIR length: | 23 (22 paired bases) |
miRNA location TIGR v3: | chr1:18835562>18835780 |
miRNA location TIGR v5: | chr1:19239434>19239652 |
Folding energy: | -62.00 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *** ACUCCCUCCG UUUCACAAUA UAAGUUGUUU UAGACCAAAU UUUUUGUUUC ACAAUAUAAG 60 (((((((((( ((((((-((( (((((((((( (((,,,,,,, ,,<<<<---- <<<<<____> UUGUUUUCAA GUUUCUAUGC AAAUUAUAUA UUACUUUAAU ACUUUAUGAU UAUUUAUAUU 120 >>>>--->>> >,,,,<<<<- <<<<<<-<<< <<<<<<<,,, ,,,,[[[[[_ ___]]]]],, CUACAGUUUC UUUUAUAAUU GGCUGAACUU UUUAAAAGUA AAUAUUUUUA AUUUACGUGC 180 ,,,[[[[[-- [[____]]-- ]]]]],,,,, ,,,,>>>>>- >>>>>--->> >>>>->>>>, UUUUAGCUAA AAUAAUUUAU AUCGUGAAAC GGAGGGAGU 219 ,,,,,,)))) )))))))))) ))-))))))) )))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|3537_118707+118867_1-23
- gnl|BL_ORD_ID|3537_118707-118867_139-161
- gnl|BL_ORD_ID|3358_103088+103238_1-23
- gnl|BL_ORD_ID|3358_103088-103238_129-151
- gnl|BL_ORD_ID|715_26724-26874_129-151
- gnl|BL_ORD_ID|715_26724+26874_1-23
- gnl|BL_ORD_ID|2457_105554-105704_129-151
- gnl|BL_ORD_ID|2457_105554+105704_1-23
- gnl|BL_ORD_ID|1261_81199-81328_108-130
- gnl|BL_ORD_ID|1261_81199+81328_1-23
- gnl|BL_ORD_ID|1162_51752+51915_1-23
- gnl|BL_ORD_ID|1162_51752-51915_142-164
- gnl|BL_ORD_ID|1086_21674-21823_128-150
- gnl|BL_ORD_ID|3508_166489+166640_1-23
- gnl|BL_ORD_ID|3508_166489-166640_130-152
- gnl|BL_ORD_ID|2691_11208-11359_130-152
- gnl|BL_ORD_ID|2691_11208+11359_1-23
- gnl|BL_ORD_ID|2434_43787+43922_1-23
- gnl|BL_ORD_ID|2434_43787-43922_114-136
- gnl|BL_ORD_ID|2393_168171-168304_112-134
- gnl|BL_ORD_ID|2393_168171+168304_1-23
- gnl|BL_ORD_ID|2358_48593+48744_1-23
- gnl|BL_ORD_ID|2358_48593-48744_130-152
- gnl|BL_ORD_ID|2028_117711+117798_1-23
- gnl|BL_ORD_ID|2028_117711-117798_66-88
- gnl|BL_ORD_ID|1999_25789-25906_96-118
- gnl|BL_ORD_ID|1999_25789+25906_1-23
- gnl|BL_ORD_ID|1300_157363+157480_1-23
- gnl|BL_ORD_ID|1300_157363-157480_96-118
- gnl|BL_ORD_ID|1277_62469-62620_130-152
- gnl|BL_ORD_ID|1277_62469+62620_1-23
- gnl|BL_ORD_ID|1060_13289+13440_1-23
- gnl|BL_ORD_ID|1060_13289-13440_130-152
- gnl|BL_ORD_ID|974_48490+48595_1-23
- gnl|BL_ORD_ID|974_48490-48595_84-106
- gnl|BL_ORD_ID|634_50557-50708_130-152
- gnl|BL_ORD_ID|634_50557+50708_1-23
- gnl|BL_ORD_ID|200_14887-14992_84-106
- gnl|BL_ORD_ID|200_14887+14992_1-23
- gnl|BL_ORD_ID|120_89039-89190_130-152
- gnl|BL_ORD_ID|120_89039+89190_1-23