IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:CACUCCCUCCGUUUCACAAUAUAAG
encoded miRNA:MIR89f
Precursor location:3105 - 3324 (positive strand)
precursor length:220 (73 basepairs)
MIR position:1 - 25 (3105 - 3129)
MIR length:25 (23 paired bases)
miRNA location TIGR v3:chr1:18835561>18835780
miRNA location TIGR v5:chr1:19239433>19239652
Folding energy:-62.30
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** *****                                       
CACUCCCUCC GUUUCACAAU AUAAGUUGUU UUAGACCAAA UUUUUUGUUU CACAAUAUAA    60
:((((((((( (((((((-(( (((((((((( ((((,,,,,, ,,,<<<<--- -<<<<<____ 

                                                                  
GUUGUUUUCA AGUUUCUAUG CAAAUUAUAU AUUACUUUAA UACUUUAUGA UUAUUUAUAU   120
>>>>>--->> >>,,,,<<<< -<<<<<<-<< <<<<<<<<,, ,,,,,[[[[[ ____]]]]], 

                                                                  
UCUACAGUUU CUUUUAUAAU UGGCUGAACU UUUUAAAAGU AAAUAUUUUU AAUUUACGUG   180
,,,,[[[[[- -[[____]]- -]]]]],,,, ,,,,,>>>>> ->>>>>---> >>>>>->>>> 

                                            
CUUUUAGCUA AAAUAAUUUA UAUCGUGAAA CGGAGGGAGU   220
,,,,,,,))) )))))))))) )))-)))))) ))))))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs