IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:UAUAUUGUGAAACGGAGGGAGUG
encoded miRNA:MIR89d
Precursor location:3105 - 3325 (negative strand)
precursor length:221 (74 basepairs)
MIR position:199 - 221 (3105 - 3127)
MIR length:23 (23 paired bases)
miRNA location TIGR v3:chr1:18835561<18835781
miRNA location TIGR v5:chr1:19239433<19239653
Folding energy:-57.54
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UACUCCCUCC GUUUCACGAU AUAAAUUAUU UUAGCUAAAA GCACGUAAAU UAAAAAUAUU    60
(((((((((( (((((((((( ((((-((-(( (((((((((, ,,,,<<<<<< <<,,,,[[[[ 

                                                                  
UACUUUUAAA AAGUUCAGCC AAUUAUAAAA GAAACUGUAG AAUAUAAAUA AUCAUAAAGU   120
[[-[[[[[-- -[[[[[____ __________ ]-]]]]-]]] ]]--]]]]]] ,,,,,,,,[[ 

                                                                  
AUUAAAGUAA UAUAUAAUUU GCAUAGAAAC UUGAAAACAA CUUAUAUUGU GAAACAAAAA   180
[[[[___]]] ]]],>>>>>> >>,,,,,,,, [[[---[[[[ ______]]]] ----]]],,, 

                   ** ********** ********** *
AUUUGGUCUA AAACAACUUA UAUUGUGAAA CGGAGGGAGU G  221
,)))))-))) )))-))-))) )))))))))) )))))))))) )

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs