IGR sequence:igr3964#chr1#x1=18832457#l=4446
Mature miRNA sequence:GCACUCCCUCCGUUUCACAAUA
encoded miRNA:MIR89a
Precursor location:3104 - 3324 (positive strand)
precursor length:221 (73 basepairs)
MIR position:1 - 22 (3104 - 3125)
MIR length:22 (19 paired bases)
miRNA location TIGR v3:chr1:18835560>18835780
miRNA location TIGR v5:chr1:19239432>19239652
Folding energy:-62.30
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** **                                          
GCACUCCCUC CGUUUCACAA UAUAAGUUGU UUUAGACCAA AUUUUUUGUU UCACAAUAUA    60
::(((((((( ((((((((-( (((((((((( (((((,,,,, ,,,,<<<<-- --<<<<<___ 

                                                                  
AGUUGUUUUC AAGUUUCUAU GCAAAUUAUA UAUUACUUUA AUACUUUAUG AUUAUUUAUA   120
_>>>>>---> >>>,,,,<<< <-<<<<<<-< <<<<<<<<<, ,,,,,,[[[[ [____]]]]] 

                                                                  
UUCUACAGUU UCUUUUAUAA UUGGCUGAAC UUUUUAAAAG UAAAUAUUUU UAAUUUACGU   180
,,,,,[[[[[ --[[____]] --]]]]],,, ,,,,,,>>>> >->>>>>--- >>>>>>->>> 

                                             
GCUUUUAGCU AAAAUAAUUU AUAUCGUGAA ACGGAGGGAG U  221
>,,,,,,,)) )))))))))) ))))-))))) )))))))))) )

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs